A video method for quantifying size distribution, density, and three-dimensional spatial structure of reef fish spawning aggregations

There is a clear need to develop fisheries independent methods to quantify individual sizes, density, and three dimensional characteristics of reef fish spawning aggregations for use in population assessments and to provide critical baseline data on reproductive life history of exploited populations. We designed, constructed, calibrated, and applied an underwater stereo-video system to estimate individual sizes and three dimensional (3D) positions of Nassau grouper (Epinephelus striatus) at a spawning aggregation site located on a reef promontory on the western edge of Little Cayman Island, Cayman Islands, BWI, on 23 January 2003. The system consists of two free-running camcorders mounted on a meter-long bar and supported by a SCUBA diver. Paired video “stills” were captured, and nose and tail of individual fish observed in the field of view of both cameras were digitized using image analysis software. Conversion of these two dimensional screen coordinates to 3D coordinates was achieved through a matrix inversion algorithm and calibration data. Our estimate of mean total length (58.5 cm, n = 29) was in close agreement with estimated lengths from a hydroacoustic survey and from direct measures of fish size using visual census techniques. We discovered a possible bias in length measures using the video method, most likely arising from some fish orientations that were not perpendicular with respect to the optical axis of the camera system. We observed 40 individuals occupying a volume of 33.3 m3, resulting in a concentration of 1.2 individuals m–3 with a mean (SD) nearest neighbor distance of 70.0 (29.7) cm. We promote the use of roving diver stereo-videography as a method to assess the size distribution, density, and 3D spatial structure of fish spawning aggregations

Nassau grouper (Epinephelus striatus) spawning aggregations: hydroacoustic surveys and geostatistical analysis

With the near extinction of many spawning aggregations of large grouper and snapper throughout the Caribbean, Gulf of Mexico, and tropical Atlantic, we need to provide baselines for their conservation. Thus, there is a critical need to develop techniques for rapidly assessing the remaining known (and unknown) aggregations. To this end we used mobile hydroacoustic surveys to estimate the density, spatial extent, and total abundance of a Nassau grouper spawning aggregation at Little Cayman Island, Cayman Islands, BWI. Hydroacoustic estimates of abundance, density, and spatial extent were similar on two sampling occasions. The location and approximate spatial extent of the Nassau grouper spawning aggregation near the shelf-break was corroborated by diver visual observations. Hydroacoustic density estimates were, overall, three-times higher than the average density observed by divers; however, we note that in some instances diver-estimated densities in localized areas were similar to hydroacoustic density estimates. The resolution of the hydroacoustic transects and geostatistical interpolation may have resulted in over-estimates in fish abundance, but still provided reasonable estimates of total spatial extent of the aggregation. Limitations in bottom time for scuba and visibility resulted in poor coverage of the entire Nassau grouper aggregation and low estimates of abundance when compared to hydroacoustic estimates. Although the majority of fish in the aggregation were well off bottom, fish that were sometimes in close proximity to the seafloor were not detected by the hydroacoustic survey. We conclude that diver observations of fish spawning aggregations are critical to interpretations of hydroacoustic surveys, and that hydroacoustic surveys provide a more accurate estimate of overall fish abundance and spatial extent than diver observations. Thus, hydroacoustics is an emerging technology that, when coupled with diver observations, provides a comprehensive survey method for monitoring spawning aggregations of fish

Artificial Shelters And Survival Of Juvenile Caribbean Spiny Lobster Panulirus-Argus - Spatial, Habitat, And Lobster Size Effects

A principal mechanism underlying a production hypothesis that artifical reefs increase environmental carrying capacity and eventually the biomass of reef-associated organisms is that these structures reduce predation on reef residents. We tested this predation mechanism with a series of field experiments at two sites (inner-bay sand-seagrass flat, and outer-bay seagrass bed adjacent to coral reefs) in Bahia de la Ascension, Mexico. We examined survival of two size-classes of juvenile Caribbean spiny lobster Panulirus argus tethered in seagrass beds with and without access to artificial lobster shelters, and at different distances from the shelters. The artificial shelters were concrete structures (casitas) that simulate lobster dens. Large juvenile lobsters (56-65 mm CL) attained a relative size refuge when tethered 60 m away from casitas compared with smaller (46-55 mm CL) lobsters. Conversely, the small lobsters survived better beneath casitas than did large lobsters. Small juveniles also survived better at casitas or 30 m away from casitas than at 15 m or 70 m away. Observations indicated that the daytime predator guild, composed primarily of snappers (family Lutjanidae), seldom foraged more than 60 m from casitas and were typically within 15 m of casitas. There was also a significant positive correlation between predation-induced lobster mortality and numbers of snapper associated with casitas at the inner-bay site. Thus, tethering lobsters 70 m away from casitas appeared adequate to examine survival of lobsters in an environment uninfluenced by daytime predators aggregating to casitas. These results indicate that (1) the relative importance of a lobster-size refuge from predators varies according to shelter availability, and (2) that there is a nonlinear relationship between predation risk and distance from an artifical shelter. Our results demonstrate that casitas increase survival of small juvenile lobsters but reduce survival of larger juveniles. Small casitas scaled according to body size may enhance survival of large juvenile lobsters in nursery habitats where large conspecifics are removed from large casitas

Soundscape manipulation enhances larval recruitment of a reef-building mollusk

© The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PeerJ 3 (2015): e999, doi:10.7717/peerj.999.Marine seafloor ecosystems, and efforts to restore them, depend critically on the influx and settlement of larvae following their pelagic dispersal period. Larval dispersal and settlement patterns are driven by a combination of physical oceanography and behavioral responses of larvae to a suite of sensory cues both in the water column and at settlement sites. There is growing evidence that the biological and physical sounds associated with adult habitats (i.e., the “soundscape”) influence larval settlement and habitat selection; however, the significance of acoustic cues is rarely tested. Here we show in a field experiment that the free-swimming larvae of an estuarine invertebrate, the eastern oyster, respond to the addition of replayed habitat-related sounds. Oyster larval recruitment was significantly higher on larval collectors exposed to oyster reef sounds compared to no-sound controls. These results provide the first field evidence that soundscape cues may attract the larval settlers of a reef-building estuarine invertebrate.Funding was provided by the National Science Foundation (Grants OCE-1234688 & ISO-1210292). Additional support for experimental materials came from a PADI Foundation Grant (#5145) and a National Shellfisheries Association Melbourne R. Carriker Student Research Grant to AL

Process-Based Statistical Models Predict Dynamic Estuarine Salinity

Climate change is increasing variation in freshwater input and the intensity of this variation in estuarine systems throughout the world. Estuarine salinity responds to dynamic meteorological and hydrological processes with important consequences to physical features, such as vertical stratification, as well as living resources, such as the distribution, abundance and diversity of species. We developed and evaluated two space-time statistical models to predict bottom salinity in Pamlico Sound, NC: (i) process and (ii) time models. Both models used 20-years of observed salinity and contained a deterministic component designed to represent four key processes that affect salinity: (1) recent and long-term fresh water influx (FWI) from four rivers, (2) mixing with the ocean through inlets, (3) hurricane incidence, and (4) interactions among these variables. Freshwater discharge and distance from an inlet to the Atlantic Ocean explained the most variance in dynamic salinity. The final process model explained 89% of spatiotemporal variability in salinity in a withheld dataset, whereas the final time model explained 87% of the variability within the same withheld data set. This study provides a methodological template for modeling salinity and other normally-distributed abiotic variables in this lagoonal estuary

Modeling Quantitative Value of Habitats for Marine and Estuarine Populations

Coastal habitats (e.g., seagrass beds, shallow mud and sand flats) strongly influence survival, growth, and reproduction of exploited marine fish and invertebrate species. Many of these species have declined over the past decades, coincident with widespread degradation of coastal habitats, such that an urgent need exists to model the quantitative value of coastal habitats to their population dynamics. Demand for habitat considerations will increase as fisheries management contends with habitat issues in stock assessments and management in general moves towards a more ecosystem-based approach. The modeling of habitat function to support fishery species has, to date, been done on a case-by-case basis involving diverse approaches and types of population models, which has made it difficult to generalize about methods for incorporating habitat into population models. In this review, we offer guiding concepts for how habitat effects can be incorporated in population models commonly used to simulate the population dynamics of exploited fish and invertebrate species. We categorize population models based on whether they are static or dynamic representations of population status, and for dynamic, further into unstructured, age/size class structured, and individual-based. We then use examples to illustrate how habitat has been incorporated, implicitly (correlative) and explicitly (mechanistically), into each of these categories. We describe the methods used and provide details on their implementation and utility to facilitate adaptation of the approaches for other species and systems. We anticipate that our review can serve as a stimulus for more widespread use of population models to quantify the value of coastal habitats for exploited species, so that their importance can be accurately realized and to facilitate cross-species and cross-system comparisons. Quantitative evaluation of habitat effects in population dynamics will increasingly be needed for traditional stock assessments, ecosystem-based fisheries management, conservation of at-risk habitats, and recovery of overexploited stocks that rely on critical coastal habitats during their life cycle

Variation in habitat soundscape characteristics influences settlement of a reef-building coral

© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PeerJ 4 (2016): e2557, doi:10.7717/peerj.2557.Coral populations, and the productive reef ecosystems they support, rely on successful recruitment of reef-building species, beginning with settlement of dispersing larvae into habitat favourable to survival. Many substrate cues have been identified as contributors to coral larval habitat selection; however, the potential for ambient acoustic cues to influence coral settlement responses is unknown. Using in situ settlement chambers that excluded other habitat cues, larval settlement of a dominant Caribbean reef-building coral, Orbicella faveolata, was compared in response to three local soundscapes, with differing acoustic and habitat properties. Differences between reef sites in the number of larvae settled in chambers isolating acoustic cues corresponded to differences in sound levels and reef characteristics, with sounds at the loudest reef generating significantly higher settlement during trials compared to the quietest site (a 29.5 % increase). These results suggest that soundscapes could be an important influence on coral settlement patterns and that acoustic cues associated with reef habitat may be related to larval settlement. This study reports an effect of soundscape variation on larval settlement for a key coral species, and adds to the growing evidence that soundscapes affect marine ecosystems by influencing early life history processes of foundational species.Funding for this project was provided by a PADI Foundation Grant (#11304) to AL and US. National Science Foundation Grant OCE-1234688 to DE and DB. Financial support to AL during manuscript preparation was also provided by the Woods Hole Oceanographic Institution’s Ocean Life and Coastal Ocean Institutes