The CAG trinucleotide repeat length in the androgen receptor does not predict the early onset of prostate cancer

Objective To relate the repeat length of the androgen-receptor CAG trinucleotide to the age of onset of prostate cancer, stage and grade of disease. Patients and methods After obtaining ethical approval, 265 patients with locally confined or locally advanced/metastatic prostate cancer were identified and evaluated for age at diagnosis (less than 65 years and greater than 75 years). DNA was extracted from peripheral blood lymphocytes and 1 mug aliquots subjected to polymerase chain reaction using fluorescently labelled primers. Samples were then run on an ABI 377 gene scan analysis gel with an internal molecular weight marker. The length of the CAG repeat was determined by comparing the gene scan product size to samples where the CAG repeat length had been quantified using direct sequencing. The Kruskal-Wallis, Mann-Whitney and Wilcoxon two sample tests were used to analyse the data. Results The mean (range) length of the CAG repeat in the androgen receptor was 22.2 (10-31) in the younger and 22.5 (16-32) in the older group, and was not statistically different. There was no significant association between the CAG repeat length and the age of onset of prostate cancer (P = 0.568) or with stage (P = 0.577) and grade (P = 0.891) of prostate cancer. Conclusion These results suggest that there is no correlation between the androgen receptor CAG repeat length and the age of onset, stage and grade of prostate cancer, confirming recent doubts from other similar studies of a suggested correlation between shorter androgen receptor CAG repeat and early onset and aggressiveness of prostate cancer

Oxygen Requirement and Inhibition of C4 Photosynthesis . An Analysis of C4 Plants Deficient in the C3 and C4 Cycles

The basis for O2 sensitivity of C4 photosynthesis was evaluated using a C4-cycle-limited mutant of Amaranthus edulis (a phosphoenolpyruvate carboxylase-deficient mutant), and a C3-cycle-limited transformant of Flaveria bidentis (an antisense ribulose-1,5-bisphosphate carboxylase/oxygenase [Rubisco] small subunit transformant). Data obtained with the C4-cycle-limited mutant showed that atmospheric levels of O2 (20 kPa) caused increased inhibition of photosynthesis as a result of higher levels of photorespiration. The optimal O2 partial pressure for photosynthesis was reduced from approximately 5 kPa O2 to 1 to 2 kPa O2, becoming similar to that of C3 plants. Therefore, the higher O2 requirement for optimal C4 photosynthesis is specifically associated with the C4 function. With the Rubisco-limited F. bidentis, there was less inhibition of photosynthesis by supraoptimal levels of O2 than in the wild type. When CO2 fixation by Rubisco is limited, an increase in the CO2 concentration in bundle-sheath cells via the C4 cycle may further reduce the oxygenase activity of Rubisco and decrease the inhibition of photosynthesis by high partial pressures of O2 while increasing CO2 leakage and overcycling of the C4 pathway. These results indicate that in C4 plants the investment in the C3 and C4 cycles must be balanced for maximum efficiency

Interhemispheric coupling, the West Antarctic Ice Sheet and warm Antarctic interglacials

Ice core evidence indicates that even though atmospheric CO2 concentrations did not exceed 300 ppm at any point during the last 800 000 years, East Antarctica was at least 3–4 C warmer than preindustrial (CO2 280 ppm) in each of the last four interglacials. During the previous three interglacials, this anomalous warming was short lived (3000 years) and apparently occurred before the completion of Northern Hemisphere deglaciation. Hereafter, we refer to these periods as “Warmer than Present Transients” (WPTs). We present a series of experiments to investigate the impact of deglacial meltwater on the Atlantic Meridional Overturning Circulation (AMOC) and Antarctic temperature. It is well known that a slowed AMOC would increase southern sea surface temperature (SST) through the bipolar seesaw and observational data suggests that the AMOC remained weak throughout the terminations precedingWPTs, strengthening rapidly at a time which coincides closely with peak Antarctic temperature. We present two 800 kyr transient simulations using the Intermediate Complexity model GENIE-1 which demonstrate that meltwater forcing generates transient southern warming that is consistent with the timing of WPTs, but is not sufficient (in this single parameterisation) to reproduce the magnitude of observed warmth. In order to investigate model and boundary condition uncertainty, we present three ensembles of transient GENIE-1 simulations across Termination II (135 000 to 124 000 BP) and three snapshot HadCM3 simulations at 130 000 BP. Only with consideration of the possible feedback of West Antarctic Ice Sheet (WAIS) retreat does it become possible to simulate the magnitude of observed warming

Limaria hians (Mollusca : Limacea): a neglected reef-forming keystone species

1. A key component of physical habitat along braided river systems is the exposed riverine sediment within the active zone. The relatively unmanaged, gravel-bed Fiume Tagliamento, Italy, provides the focus for exploring two ecologically important properties of exposed riverine sediments: their within-patch and between-patch variability in calibre. 2. To characterize between-patch variation in exposed riverine sediments, replicate (within-patch) samples were obtained from three geomorphologically distinct locations along 130 km of the river: bar heads along the margin of the low-flow channel, the heads of major bars across the exposed surface of the active zone, and floodplain surfaces. A photographic technique enabled rapid and consistent field sampling of the coarse sediments at bar heads along the low-flow channel margin and on major bars across the dry bed. 3. A downstream decrease in particle size and an increase in within-patch heterogeneity in sediment size were observed within bar head sediments along the margin of the low-flow channel. Comparisons between major bar and low-flow channel samples revealed greatest within-patch variability in individual sediment size indices (D50, A- and B-axes of the larger particles) at headwater sites, greatest between-patch variability in the three measured indices in the central reaches, and lowest between-patch variability at downstream sites. However, there was a distinct increase in the overall heterogeneity in particle size, which was sustained across all patches, in a downstream direction. 4. There was a clear downstream decrease in the size of floodplain sediments in the headwaters, but thereafter there was no distinct downstream trend in any of the calculated particle size indices. 5. The geomorphological controls on the observed patterns and the potential ecological significance of the patterns, particularly for plant establishment, are discussed in relation to the relative relief of the active zone, and the highly variable hydrological and climatic regime along the river

Perceptions of Time, Cost and Quality Management on Building Projects

This paper examines the relative intrinsic importance of the effective management of projecttime, cost and quality in the attainment of client objectives. The findings from a questionnairesurvey are presented. The survey explored the perceptions of South Africanclients concerning their objectives and the project time, cost and quality management associatedwith building procurement systems in South Africa. The findings indicate thatmis-perceptions exist between clients, contractors and building professionals regardingthe time, cost and quality management associated with building projects, and the contributionthis makes to the attainment of client objectives

Early-Holocene warming in Beringia and its mediation by sea-level and vegetation changes

Arctic land-cover changes induced by recent global climate change (e.g., expansion of woody vegetation into tundra and effects of permafrost degradation) are expected to generate further feedbacks to the climate system. Past changes can be used to assess our understanding of feedback mechanisms through a combination of process modelling and paleo-observations. The sub-continental region of Beringia (Northeast Siberia, Alaska, and northwestern Canada) was largely ice-free at the peak of deglacial warming and experienced both major vegetation change and loss of permafrost when many arctic regions were still ice covered. The evolution of Beringian climate at this time was largely driven by global features, such as the amplified seasonal cycle of Northern Hemisphere insolation and changes in global ice volume and atmospheric composition, but changes in regional land-surface controls, such as the widespread development of thaw lakes, the replacement of tundra by deciduous forest or woodland, and the flooding of the Bering–Chukchi land bridge, were probably also important. We examined the sensitivity of Beringia’s early Holocene climate to these regional-scale controls using a regional climate model (RegCM). Lateral and oceanic boundary conditions were provided by global climate simulations conducted using the GENESIS V2.01 atmospheric general circulation model (AGCM) with a mixed-layer ocean. We carried out two present day simulations of regional climate, one with modern and one with 11 ka geography, plus another simulation for 6 ka. In addition, we performed five ? 11 ka climate simulations, each driven by the same global AGCM boundary conditions: (i) 11 ka “Control”, which represents conditions just prior to the major transitions (exposed land bridge, no thaw lakes or wetlands, widespread tundra vegetation), (ii) sea-level rise, which employed present day continental outlines, (iii) vegetation change, with deciduous needleleaf and deciduous broadleaf boreal vegetation types distributed as suggested by the paleoecological record, (iv) thaw lakes, which used the present day distribution of lakes and wetlands; and (v) post-11 ka “All”, incorporating all boundary conditions changed in experiments (ii)–(iv). We find that regional-scale controls strongly mediate the climate responses to changes in the large-scale controls, amplifying them in some cases, damping them in others, and, overall, generating considerable spatial heterogeneity in the simulated climate changes. The change from tundra to deciduous woodland produces additional widespread warming in spring and early summer over that induced by the 11 ka insolation regime alone, and lakes and wetlands produce modest and localized cooling in summer and warming in winter. The greatest effect is the flooding of the land bridge and shelves, which produces generally cooler conditions in summer but warmer conditions in winter and is most clearly manifest on the flooded shelves and in eastern Beringia. By 6 ka continued amplification of the seasonal cycle of insolation and loss of the Laurentide ice sheet produce temperatures similar to or higher than those at 11 ka, plus a longer growing season

Two-dimensional one-component plasma on a Flamm's paraboloid

We study the classical non-relativistic two-dimensional one-component plasma at Coulomb coupling Gamma=2 on the Riemannian surface known as Flamm's paraboloid which is obtained from the spatial part of the Schwarzschild metric. At this special value of the coupling constant, the statistical mechanics of the system are exactly solvable analytically. The Helmholtz free energy asymptotic expansion for the large system has been found. The density of the plasma, in the thermodynamic limit, has been carefully studied in various situations

Small eigenvalues of the staggered Dirac operator in the adjoint representation and Random Matrix Theory

The low-lying spectrum of the Dirac operator is predicted to be universal, within three classes, depending on symmetry properties specified according to random matrix theory. The three universal classes are the orthogonal, unitary and symplectic ensemble. Lattice gauge theory with staggered fermions has verified two of the cases so far, unitary and symplectic, with staggered fermions in the fundamental representation of SU(3) and SU(2). We verify the missing case here, namely orthogonal, with staggered fermions in the adjoint representation of SU(N_c), N_c=2, 3.Comment: 3 pages, revtex, 2 postscript figure

Sex-Biased Gene Flow Among Elk in the Greater Yellowstone Ecosystem

We quantified patterns of population genetic structure to help understand gene flow among elk populations across the Greater Yellowstone Ecosystem. We sequenced 596 base pairs of the mitochondrial control region of 380 elk from eight populations. Analysis revealed high mitochondrial DNA variation within populations, averaging 13.0 haplotypes with high mean gene diversity (0.85). The genetic differentiation among populations for mitochondrial DNA was relatively high (FST = 0.161; P = 0.001) compared to genetic differentiation for nuclear microsatellite data (FST = 0.002; P = 0.332), which suggested relatively low female gene flow among populations. The estimated ratio of male to female gene flow (mm/mf = 46) was among the highest we have seen reported for large mammals. Genetic distance (for mitochondrial DNA pairwise FST) was not significantly correlated with geographic (Euclidean) distance between populations (Mantel’s r = 0.274, P = 0.168). Large mitochondrial DNA genetic distances (e.g., FST . 0.2) between some of the geographically closest populations (,65 km) suggested behavioral factors and/or landscape features might shape female gene flow patterns. Given the strong sex-biased gene flow, future research and conservation efforts should consider the sexes separately when modeling corridors of gene flow or predicting spread of maternally transmitted diseases. The growing availability of genetic data to compare male vs. female gene flow provides many exciting opportunities to explore the magnitude, causes, and implications of sex-biased gene flow likely to occur in many species

Spectrum of the SU(3) Dirac operator on the lattice: Transition from random matrix theory to chiral perturbation theory

We calculate complete spectra of the Kogut-Susskind Dirac operator on the lattice in quenched SU(3) gauge theory for various values of coupling constant and lattice size. From these spectra we compute the connected and disconnected scalar susceptibilities and find agreement with chiral random matrix theory up to a certain energy scale, the Thouless energy. The dependence of this scale on the lattice volume is analyzed. In the case of the connected susceptibility this dependence is anomalous, and we explain the reason for this. We present a model of chiral perturbation theory that is capable of describing the data beyond the Thouless energy and that has a common range of applicability with chiral random matrix theory.Comment: 8 pages, RevTeX, 15 .eps figure