Hampton-Seabrook Estuary Habitat Restoration Compendium

The goal of this report is to identify restoration opportunities within the watershed derived from data on habitat change. Many other factors exist that are important in the identification and selection of restoration projects, including water quality and non-point source pollution, water withdrawal, harbor maintenance, recreational impacts, human history, and socioeconomic factors, among others. Although information regarding these factors is not explicitly included in this analysis, these factors must be considered and addressed as they may limit the potential for success in specific restoration effort

Hampton-Seabrook Estuary Restoration Compendium

The Hampton-Seabrook Estuary Habitat Restoration Compendium (HSEHRC) is a compilation of information on the historic and current distributions of salt marsh and sand dune habitats and diadromous fishes within the Hampton-Seabrook Estuary watershed. These habitats and species groups were selected due to the important ecological role they play within the watershed and with effective restoration and conservation efforts, will continue to play. Other ecologically important habitats and species, such as avifauna, shellfish and eelgrass beds, currently are or historically were present within the watershed. Shellfish and seagrass are recognized as important habitats within the Estuary, but were not included in the current report because a different analytical approach may be required for such dynamic and/or short-lived species. A recent report by the New Hampshire (NH) Audubon Society details modern bird use of the Hampton-Seabrook Estuary (McKinley and Hunt 2008). Restoration opportunities have been identified within the watershed by evaluating habitat loss and changes in land use over time. Restoration opportunities are not prioritized in order to allow the goals and objectives of each restoration practitioner to govern project selection. However, in accordance with an ecosystem-based approach to restoration, areas containing multi-habitat restoration opportunities are considered to be of the highest priority. Furthermore, restoration efforts should ensure processes critical for the support of restored components are maintained or reestablished. The goal of this report is to identify restoration opportunities within the watershed derived from data on habitat change. Many other factors exist that are important in the identification and selection of restoration projects, including water quality and non-point source pollution, water withdrawal, harbor maintenance, recreational impacts, human history, and socioeconomic factors, among others. Although information regarding these factors is not explicitly included in this analysis, these factors must be considered and addressed as they may limit the potential for success in specific restoration efforts We present a series of maps detailing changes in the extent of sand dune and salt marsh habitats over time, the current and historic distribution of seven diadromous fish species, and restoration opportunities within the Hampton-Seabrook Estuary and watershed. A narrative describes the methods used, the results of analyses and examples of prominent restoration projects. Each major section concludes with references used in the narrative and maps. The maps are available for viewing as portable document format (.pdf) files. For those with GIS capabilities, the ArcMap 9.2 project files, associated data files and metadata are included on the compact disc as well. The underlying concept and methods for the HSEHRC stem from a previous project conducted within the Great Bay Estuary, the Great Bay Estuary Restoration Compendium (Odell et al. 2006)

Models of ungulate population dynamics

A useful theory for analyzing ungulate population dynamics is available in the form of equations based on the work of A. J. Lotka. Because the Leslie matrix model yields identical results and is widely known, it is convenient to label the resulting equations as the "Lotka-Leslie" model. The approach is useful for assessing population trends and attempting to predict the outcomes of various management actions. A broad list of applications to large mammals, and two examples specific to caribou are presented with a simple spreadsheet approach to calculations

Censusing manatees: a report on the feasibility of using aerial surveys and mark and recapture techniques to conduct a population survey of the West Indian Manatee

This report results from an invitation to review the needs and prospects for capture-recapture and aerial census studies of the manatee (Trichechus manatus) in Florida. Three aerial reconnaissance flights provided a first hand view of manatee habitats, as follows: May 3, Suwannee River to Kings Bay and Crystal River (Rathbun, Eberhardt), May 4, Vero Beach to Ft. Lauderdale and Ft. Myers by way of Whitewater Bay (Rose, Percival, Eberhardt), and May 5, Cape Canaveral to Jacksonville, St. Johns River and Blue Spring (Rose, Kinnaird, Eberhardt). (24 page document

Great Bay Estuary Restoration Compendium

Single species approaches to natural resource conservation and management are now viewed as antiquated and oversimplified for dealing with complex systems. Scientists and managers who work in estuaries and other marine systems have urged adoption of ecosystem based approaches to management for nearly a decade, yet practitioners are still struggling to translate the ideas into practice. Similarly, ecological restoration projects in coastal systems have typically addressed one species or habitat. In recent years, efforts to focus on multiple species and habitats have increased. Our project developed an integrated ecosystem approach to identify multi-habitat restoration opportunities in the Great Bay estuary, New Hampshire. We created a conceptual site selection model based on a comparison of historic and modern distribution and abundance data, current environmental conditions, and expert review. Restoration targets included oysters and softshell clams, salt marshes, eelgrass beds, and seven diadromous fish species. Spatial data showing the historical and present day distributions for multiple species and habitats were compiled and integrated into a geographic information system. A matrix of habitat interactions was developed to identify potential for synergy and subsequent restoration efficiency. Output from the site selection models was considered within this framework to identify ecosystem restoration landscapes. The final products of these efforts include a series of maps detailing multi-habitat restoration opportunities extending from upland freshwater fish habitat down to the bay bottom. A companion guidance document was created to present project methods and a review of restoration methods. The authors hope that this work will help to stimulate and inform new restoration projects within the Great Bay estuarine system, and that it will serve as a foundation to be updated and improved as more information is collected

The Food of Pond Fish in Northern Utah

A series of ponds in northern Utah supplied mainly by artesian water was poisoned with rotenone during 1949-1950

Technical Note: Evaluation of a Crucible Furnace Retort for Laboratory Torrefactions of Wood Chips

Torrefaction is a thermal process that improves biomass performance as a fuel by property enhancements such as decreased moisture uptake and increased carbon density. Most studies to date have used very small amounts of finely ground biomass. This study reports the testing of a crucible furnace retort that was fabricated to produce intermediate quantities of torrefied material and to allow processing of wood chips. Yields ranging from 51 to 96% were impacted to a greater extent by differences in temperature than time of treatment. Although temperature-control issues (gradients, slow heating) were experienced with the crucible furnace retort, this equipment proved to be useful for its intended purpose

Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase.

BackgroundBacteroides spp. form a significant part of our gut microbiome and are well known for optimized metabolism of diverse polysaccharides. Initial analysis of the archetypal Bacteroides thetaiotaomicron genome identified 172 glycosyl hydrolases and a large number of uncharacterized proteins associated with polysaccharide metabolism.ResultsBT_1012 from Bacteroides thetaiotaomicron VPI-5482 is a protein of unknown function and a member of a large protein family consisting entirely of uncharacterized proteins. Initial sequence analysis predicted that this protein has two domains, one on the N- and one on the C-terminal. A PSI-BLAST search found over 150 full length and over 90 half size homologs consisting only of the N-terminal domain. The experimentally determined three-dimensional structure of the BT_1012 protein confirms its two-domain architecture and structural analysis of both domains suggests their specific functions. The N-terminal domain is a putative catalytic domain with significant similarity to known glycoside hydrolases, the C-terminal domain has a beta-sandwich fold typically found in C-terminal domains of other glycosyl hydrolases, however these domains are typically involved in substrate binding. We describe the structure of the BT_1012 protein and discuss its sequence-structure relationship and their possible functional implications.ConclusionsStructural and sequence analyses of the BT_1012 protein identifies it as a glycosyl hydrolase, expanding an already impressive catalog of enzymes involved in polysaccharide metabolism in Bacteroides spp. Based on this we have renamed the Pfam families representing the two domains found in the BT_1012 protein, PF13204 and PF12904, as putative glycoside hydrolase and glycoside hydrolase-associated C-terminal domain respectively