Importance of organic phosphate hydrolyzed in stalks of the lotic diatom Didymosphenia geminata and the possible impact of atmospheric and climatic changes

The aquatic colonial stalked diatom, Didymosphenia geminata, has acquired notoriety in recent years because of huge increases in many rivers of temperate regions. However, in some streams in northern England it has probably or, in the case of the R. Coquet (Northumberland), certainly been abundant for many decades. The paper describes the nutrient environment and phosphatase activities of Didymosphenia in Stony Gill (N. Yorkshire), a fast-flowing stream draining an upland catchment with peaty soils overlying limestone. Organic phosphate formed 85% of the filtrable phosphate in the water during the study (January–August 2000), with a maximum in April. Colonies were most abundant in June, but had disappeared by August. Surface phosphomonoesterase (PMEase) and phosphodiesterase activities assayed from March to July showed low PMEase activity in early March, but otherwise both were high throughout the period and especially so in June and July. Use of BCIP-NBT staining procedure showed that PMEase activity occurred in the stalks. A more detailed study of colony structure and staining with material from the R. Coquet in June 2006 also showed marked PMEase activity, with staining localized in the upper part of the stalks and the cells remaining unstained. It is suggested that organic phosphate is hydrolyzed in the stalk and the inorganic phosphate passes to the cell via a central tube in the stalk. It seems likely that organic phosphate as a major P source is a key factor favouring the success of Didymosphenia. The possible impact of environmental changes in the catchment such as climatic warming, C loss from peat and atmospheric N deposition is discussed

Biology of the freshwater diatom Didymosphenia : a review

Features of the colonial diatom Didymosphenia are reviewed, especially D. geminata. Although there is a long record of its occurrence in north temperate regions, mass growths have been reported much more widely in recent years. Contrary to some statements in the literature, there are also reliable older records for the southern hemisphere, though the first report of mass growth was in New Zealand in 2004. The annual cycle of morphological changes in D. geminata in northern England, and probably elsewhere, includes a winter period when motile cells are attached to the substratum followed by spring when stalks start to develop. These raise cells into the water column and provide a site for phosphatase activity. Environmental factors associated with success include absence of extreme floods, high light, pH above neutral and nutrient chemistry. D. geminata often, but not always, occurs in waters where the N:P ratio is high for much of the year, but the key factor is the ratio of organic to inorganic phosphate. D. geminata thrives where organic P is predominant and the overall P concentration is low enough for organic P to be an important P source. It is unknown whether organic N can be used. Environmental changes increasing the relative importance of organic P are likely to favour D. geminata. Likely examples are increased N:P due to atmospheric N deposition and changes in form and seasonality of P release from organic-rich soils due to climatic warming. The nutrient chemistry of deep water released from dams to rivers also needs investigation. To what extent are genetic changes occurring in response to environmental changes and are new ecotypes spreading round the world? In spite of many adverse reports about D. geminata, such as detached mats blocking water pipes, there is still doubt about the extent to which it causes problems, particularly for fish. There have been few adverse effects on migratory salmonids in Europe and North America, but at least one report of harm to a brown trout population in USA. In New Zealand, it has caused serious problems for water sports, although it remains open to question how much adverse effect it has had on fish populations. If the presence of microcystins in or associated with D. geminata, as indicated recently for two populations, proves to be widespread and at sufficiently high concentration, their possible accumulation in fish requires study. Where control is required, this could be achieved by enhancing the ratio of inorganic to organic phosphate in the water early in the growth season. Practical ways to achieve this are suggested

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Biodeterioration of Roman hypogea: the case study of the Catacombs of SS. Marcellino and Pietro (Rome, Italy)

No information exists on phototrophs growing on the stone surfaces of the Catacombs of SS. Marcellino and Pietro (the site was only recently opened to the public in 2014). Therefore, it was decided to characterise the microbial communities and to compare them with those of the other previously studied catacombs. Moreover, a new non-invasive strategy to reduce the phototrophic growth was tested. Phototrophic microorganisms were investigated under light and confocal laser scanning microscopes from samples collected non-invasively in situ. Tests were carried out to determine the effect of the application of two essential oils (from L. angustifolia and T. vulgaris) on biofilm photosynthetic activity. Laser-induced fluorescence (LIF) and reflectance measurements in the visible range have been used to evaluate respectively, any chemical modification and discolouration on a frescoed stone that may occur after the application of the essential oils. At all the concentrations of essential oils, there was a quasi-immediate, large reduction in photosynthetic activity of the biofilms. At 10% essential oil concentration, there was no detectable photosynthetic activity after 15 min. At 1%, there was a need for two applications and after 5-day activity was undetectable. No effect of the essential oils on the substrate surface properties or colour modification of the fresco has been observed with the LIF prototype. Cyanobacterial typical of Roman catacombs were present in the sites investigated. Innovative and non-destructive strategies, involving the application of a combination of two essential oils, have been successfully tested and developed to prevent biodeterioration of these sites