Signal Transmission Across Tile Assemblies: 3D Static Tiles Simulate Active Self-Assembly by 2D Signal-Passing Tiles

The 2-Handed Assembly Model (2HAM) is a tile-based self-assembly model in which, typically beginning from single tiles, arbitrarily large aggregations of static tiles combine in pairs to form structures. The Signal-passing Tile Assembly Model (STAM) is an extension of the 2HAM in which the tiles are dynamically changing components which are able to alter their binding domains as they bind together. For our first result, we demonstrate useful techniques and transformations for converting an arbitrarily complex STAM$^+$ tile set into an STAM$^+$ tile set where every tile has a constant, low amount of complexity, in terms of the number and types of ``signals'' they can send, with a trade off in scale factor. Using these simplifications, we prove that for each temperature $\tau>1$ there exists a 3D tile set in the 2HAM which is intrinsically universal for the class of all 2D STAM$^+$ systems at temperature $\tau$ (where the STAM$^+$ does not make use of the STAM's power of glue deactivation and assembly breaking, as the tile components of the 2HAM are static and unable to change or break bonds). This means that there is a single tile set $U$ in the 3D 2HAM which can, for an arbitrarily complex STAM$^+$ system $S$, be configured with a single input configuration which causes $U$ to exactly simulate $S$ at a scale factor dependent upon $S$. Furthermore, this simulation uses only two planes of the third dimension. This implies that there exists a 3D tile set at temperature $2$ in the 2HAM which is intrinsically universal for the class of all 2D STAM$^+$ systems at temperature $1$. Moreover, we show that for each temperature $\tau>1$ there exists an STAM$^+$ tile set which is intrinsically universal for the class of all 2D STAM$^+$ systems at temperature $\tau$, including the case where $\tau = 1$.Comment: A condensed version of this paper will appear in a special issue of Natural Computing for papers from DNA 19. This full version contains proofs not seen in the published versio

Controlled Growth, Patterning and Placement of Carbon Nanotube Thin Films

Controlled growth, patterning and placement of carbon nanotube (CNT) thin films for electronic applications are demonstrated. The density of CNT films is controlled by optimizing the feed gas composition as well as the concentration of growth catalyst in a chemical vapor deposition process. Densities of CNTs ranging from 0.02 CNTs/{\mu}m^2 to 1.29 CNTs/{\mu}m^2 are obtained. The resulting pristine CNT thin films are then successfully patterned using either pre-growth or post-growth techniques. By developing a layered photoresist process that is compatible with ferric nitrate catalyst, significant improvements over popular pre-growth patterning methods are obtained. Limitations of traditional post-growth patterning methods are circumvented by selective transfer printing of CNTs with either thermoplastic or metallic stamps. Resulting as-grown patterns of CNT thin films have edge roughness (< 1 {\mu}m) and resolution (< 5 {\mu}m) comparable to standard photolithography. Bottom gate CNT thin film devices are fabricated with field-effect mobilities up to 20 cm^2/Vs and on/off ratios of the order of 10^3. The patterning and transfer printing methods discussed here have a potential to be generalized to include other nanomaterials in new device configurations

Complementary vertices and adjacency testing in polytopes

Our main theoretical result is that, if a simple polytope has a pair of complementary vertices (i.e., two vertices with no facets in common), then it has at least two such pairs, which can be chosen to be disjoint. Using this result, we improve adjacency testing for vertices in both simple and non-simple polytopes: given a polytope in the standard form {x \in R^n | Ax = b and x \geq 0} and a list of its V vertices, we describe an O(n) test to identify whether any two given vertices are adjacent. For simple polytopes this test is perfect; for non-simple polytopes it may be indeterminate, and instead acts as a filter to identify non-adjacent pairs. Our test requires an O(n^2 V + n V^2) precomputation, which is acceptable in settings such as all-pairs adjacency testing. These results improve upon the more general O(nV) combinatorial and O(n^3) algebraic adjacency tests from the literature.Comment: 14 pages, 5 figures. v1: published in COCOON 2012. v2: full journal version, which strengthens and extends the results in Section 2 (see p1 of the paper for details

Second-order corrections to slow-roll inflation in the brane cosmology

We calculate the power spectrum, spectral index, and running spectral index for the RS-II brane inflation in the high-energy regime using the slow-roll expansion. There exist several modifications. As an example, we take the power-law inflation by choosing an inverse power-law potential. When comparing these with those arisen in the standard inflation, we find that the power spectrum is enhanced and the spectral index is suppressed, while the running spectral index becomes zero as in the standard inflation. However, since second-order corrections are rather small, these could not play a role of distinguishing between standard and brane inflations.Comment: 6 page

Thermodynamics and evaporation of the noncommutative black hole

We investigate the thermodynamics of the noncommutative black hole whose static picture is similar to that of the nonsingular black hole known as the de Sitter-Schwarzschild black hole. It turns out that the final remnant of extremal black hole is a thermodynamically stable object. We describe the evaporation process of this black hole by using the noncommutativity-corrected Vaidya metric. It is found that there exists a close relationship between thermodynamic approach and evaporation process.Comment: 16 pages, 6 figures, added references, to appear in JHE

Second-order corrections to noncommutative spacetime inflation

We investigate how the uncertainty of noncommutative spacetime affects on inflation. For this purpose, the noncommutative parameter $\mu_0$ is taken to be a zeroth order slow-roll parameter. We calculate the noncommutative power spectrum up to second order using the slow-roll expansion. We find corrections arisen from a change of the pivot scale and the presence of a variable noncommutative parameter, when comparing with the commutative power spectrum. The power-law inflation is chosen to obtain explicit forms for the power spectrum, spectral index, and running spectral index. In cases of the power spectrum and spectral index, the noncommutative effect of higher-order corrections compensates for a loss of higher-order corrections in the commutative case. However, for the running spectral index, all higher-order corrections to the commutative case always provide negative spectral indexes, which could explain the recent WMAP data.Comment: 15 pages, no figure, version published in PR

Particle physics models of inflation

Inflation models are compared with observation on the assumption that the curvature perturbation is generated from the vacuum fluctuation of the inflaton field. The focus is on single-field models with canonical kinetic terms, classified as small- medium- and large-field according to the variation of the inflaton field while cosmological scales leave the horizon. Small-field models are constructed according to the usual paradigm for beyond Standard Model physicsComment: Based on a talk given at the 22nd IAP Colloquium, ``Inflation +25'', Paris, June 2006 Curve omitted from final Figur

On a Light Spinless Particle Coupled to Photons

A pseudoscalar or scalar particle $\phi$ that couples to two photons but not to leptons, quarks and nucleons would have effects in most of the experiments searching for axions, since these are based on the $a \gamma \gamma$ coupling. We examine the laboratory, astrophysical and cosmological constraints on $\phi$ and study whether it may constitute a substantial part of the dark matter. We also generalize the $\phi$ interactions to possess $SU(2) \times U(1)$ gauge invariance, and analyze the phenomenological implications.Comment: LaTex, 20p., 6 figures. Changes in sections 4, 5 and figure 2, our bounds are now more stringent. To be published in Physical Review

Effects of Diabetes and Insulin on α-amylase Messenger RNA Levels in Rat Parotid Glands

Previous studies have shown that amylase levels are reduced significantly in the pancreas and parotid gland of diabetic rats and that insulin reverses this effect and increases the secretory protein levels. In the pancreas, these changes in amylase protein levels are accompanied by parallel changes in amylase mRNA levels. In the present study, the effects of diabetes and subsequent insulin treatments on contents (per cell) of amylase protein and its mRNA in parotid glands were compared in rats rendered diabetic with an injection of a beta-cell toxin, streptozotocin (STZ). Both amylase protein and its mRNA contents were reduced significantly in diabetic rats, compared with control rats, and this reduction was reversed following insulin injections of diabetic rats. In insulin-injected diabetic rats, amylase protein contents increased before a detectable increase in amylase mRNA levels was seen. The mRNA contents of a non-secretory protein, actin, did not change during diabetogenesis or subsequent insulin treatments. The reductions in parotid contents of amylase and its mRNA in diabetic rats and the reversal of these changes by insulin are similar to those changes that occur in the pancreas under the same conditions. However, the magnitude of these changes in parotid glands was much smaller than in the pancreas, and the effect of insulin on amylase mRNA synthesis was not as immediate as in the latter gland.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/67977/2/10.1177_00220345900690081001.pd

Axion and neutrino physics from anomaly cancellation

It has been recently shown that the requirement of anomaly cancellation in a (non-supersymmetric) six-dimensional version of the standard model fixes the field content to the known three generations. We discuss the phenomenological consequences of the cancellation of the local anomalies: the strong CP problem is solved and the fundamental scale of the theory is bounded by the physics of the axion. Neutrinos acquire a mass in the range suggested by atmospheric experiments.Comment: 9 pages, RevTeX