Pesticide leaching in Danish groundwater: identification of vulnerable areas

In Denmark the supply of drinking water is based almost solely on groundwater. During the past few decades Danish groundwater monitoring has encountered numerous instances of pollution with pesticides and their metabolites (GEUS 2003a). As a result, some hundreds of abstraction wells out of about 8000 in general water supply have been closed. With this background, there is a particular concern for reducing the leaching of pesticides into the groundwater. In the present study an approach for identification of areas potentially prone to pesticide leaching is described. The potential risk of leaching of pesticides from agricultural areas into groundwater is minimised through a procedure of approval; however, some leaching still occurs (GEUS 2003b). The Danish counties are therefore obliged to identify areas where there is a particular risk of pesticide leaching, and where restrictions in use of pesticides may be introduced to reduce the risk (Miljøstyrelsen 2000). The Geological Survey of Denmark and Greenland (GEUS) and the Danish Institute of Agricultural Sciences (DJF) have carried out a project, focusing on sandy agricultural areas, that attempts to establish the necessary background knowledge for identifying areas particularly prone to pesticide leaching. The project aims to distinguish vulnerable and less vulnerable areas, both locally and nationwide, in a cost-effective way

Epidemiology of plasmid lineages mediating the spread of extended-spectrum beta-lactamases among clinical Escherichia coli

The prevalence of extended-spectrum beta-lactamases (ESBLs) among clinical isolates of Escherichia coli has been increasing, with this spread driven by ESBL-encoding plasmids. However, the epidemiology of ESBL-disseminating plasmids remains understudied, obscuring the roles of individual plasmid lineages in ESBL spread. To address this, we performed an in-depth genomic investigation of 149 clinical ESBL-like E. coli isolates from a tertiary care hospital. We obtained high-quality assemblies for 446 plasmids, revealing an extensive map of plasmid sharing that crosses time, space, and bacterial sequence type boundaries. Through a sequence-based network, we identified specific plasmid lineages that are responsible for the dissemination of major ESBLs. Notably, we demonstrate that IncF plasmids separate into 2 distinct lineages that are enriched for different ESBLs and occupy distinct host ranges. Our work provides a detailed picture of plasmid-mediated spread of ESBLs, demonstrating the extensive sequence diversity within identified lineages, while highlighting the genetic elements that underlie the persistence of these plasmids within the clinical E. coli population

Eccentric, nonspinning, inspiral, Gaussian-process merger approximant for the detection and characterization of eccentric binary black hole mergers

We present $\texttt{ENIGMA}$, a time domain, inspiral-merger-ringdown waveform model that describes non-spinning binary black holes systems that evolve on moderately eccentric orbits. The inspiral evolution is described using a consistent combination of post-Newtonian theory, self-force and black hole perturbation theory. Assuming eccentric binaries that circularize prior to coalescence, we smoothly match the eccentric inspiral with a stand-alone, quasi-circular merger, which is constructed using machine learning algorithms that are trained with quasi-circular numerical relativity waveforms. We show that $\texttt{ENIGMA}$ reproduces with excellent accuracy the dynamics of quasi-circular compact binaries. We validate $\texttt{ENIGMA}$ using a set of $\texttt{Einstein Toolkit}$ eccentric numerical relativity waveforms, which describe eccentric binary black hole mergers with mass-ratios between $1 \leq q \leq 5.5$, and eccentricities $e_0 \lesssim 0.2$ ten orbits before merger. We use this model to explore in detail the physics that can be extracted with moderately eccentric, non-spinning binary black hole mergers. We use $\texttt{ENIGMA}$ to show that GW150914, GW151226, GW170104, GW170814 and GW170608 can be effectively recovered with spinning, quasi-circular templates if the eccentricity of these events at a gravitational wave frequency of 10Hz satisfies $e_0\leq \{0.175,\, 0.125,\,0.175,\,0.175,\, 0.125\}$, respectively. We show that if these systems have eccentricities $e_0\sim 0.1$ at a gravitational wave frequency of 10Hz, they can be misclassified as quasi-circular binaries due to parameter space degeneracies between eccentricity and spin corrections. Using our catalog of eccentric numerical relativity simulations, we discuss the importance of including higher-order waveform multipoles in gravitational wave searches of eccentric binary black hole mergers.Comment: 19 pages, 10 figures, 1 Appendix. v2: we use numerical relativity simulations to quantify the importance of including higher-order waveform multipoles for the detection of eccentric binary black hole mergers, references added. Accepted to Phys. Rev.

The ancestry and affiliations of Kennewick Man

Kennewick Man, referred to as the Ancient One by Native Americans, is a male human skeleton discovered in Washington state (USA) in 1996 and initially radiocarbon dated to 8,340-9,200 calibrated years before present (BP). His population affinities have been the subject of scientific debate and legal controversy. Based on an initial study of cranial morphology it was asserted that Kennewick Man was neither Native American nor closely related to the claimant Plateau tribes of the Pacific Northwest, who claimed ancestral relationship and requested repatriation under the Native American Graves Protection and Repatriation Act (NAGPRA). The morphological analysis was important to judicial decisions that Kennewick Man was not Native American and that therefore NAGPRA did not apply. Instead of repatriation, additional studies of the remains were permitted. Subsequent craniometric analysis affirmed Kennewick Man to be more closely related to circumpacific groups such as the Ainu and Polynesians than he is to modern Native Americans. In order to resolve Kennewick Man's ancestry and affiliations, we have sequenced his genome to ∼1× coverage and compared it to worldwide genomic data including for the Ainu and Polynesians. We find that Kennewick Man is closer to modern Native Americans than to any other population worldwide. Among the Native American groups for whom genome-wide data are available for comparison, several seem to be descended from a population closely related to that of Kennewick Man, including the Confederated Tribes of the Colville Reservation (Colville), one of the five tribes claiming Kennewick Man. We revisit the cranial analyses and find that, as opposed to genome-wide comparisons, it is not possible on that basis to affiliate Kennewick Man to specific contemporary groups. We therefore conclude based on genetic comparisons that Kennewick Man shows continuity with Native North Americans over at least the last eight millennia