Prevalence of inclusion body disease and associated comorbidity in captive collections of boid and pythonid snakes in Belgium

Inclusion body disease (IBD) is caused by reptarenaviruses and constitutes one of the most notorious viral diseases in snakes. Although central nervous system disease and various other clinical signs have been attributed to IBD in boid and pythonid snakes, studies that unambiguously reveal the clinical course of natural IBD and reptarenavirus infection are scarce. In the present study, the prevalence of IBD and reptarenaviruses in captive snake collections and the correlation of IBD and reptarenavirus infection with the clinical status of the sampled snakes were investigated. In three IBD positive collections, long-term follow-up during a three- to seven-year period was performed. A total of 292 snakes (178 boas and 114 pythons) from 40 collections in Belgium were sampled. In each snake, blood and buffy coat smears were evaluated for the presence of IBD inclusion bodies (IB) and whole blood was tested for reptarenavirus RNA by RT-PCR. Of all tested snakes, 16.5% (48/292) were positive for IBD of which all were boa constrictors (34.0%; 48/141) and 17.1% (50/292) were reptarenavirus RT-PCR positive. The presence of IB could not be demonstrated in any of the tested pythons, while 5.3% (6/114) were reptarenavirus positive. In contrast to pythons, the presence of IB in peripheral blood cells in boa constrictors is strongly correlated with reptarenavirus detection by RT-PCR (P<0.0001). Although boa constrictors often show persistent subclinical infection, long-term follow-up indicated that a considerable number (22.2%; 6/27) of IBD/reptarenavirus positive boas eventually develop IBD associated comorbidities

Height and Biomass of Mangroves in Africa from ICEsat/GLAS and SRTM

The accurate quantification of forest 3-D structure is of great importance for studies of the global carbon cycle and biodiversity. These studies are especially relevant in Africa, where deforestation rates are high and the lack of background data is great. Mangrove forests are ecologically significant and it is important to measure mangrove canopy heights and biomass. The objectives of this study are to estimate: 1. The total area, 2. Canopy height distributions and 3. Aboveground biomass of mangrove forests in Africa. To derive mangrove 3-D structure and biomass maps, we used a combination of mangrove maps derived from Landsat ETM+, LiDAR canopy height estimates from ICEsat/GLAS (Ice, Cloud, and land Elevation Satellite/Geoscience Laser Altimeter System) and elevation data from SRTM (Shuttle Radar Topography Mission) for the African continent. More specifically, we extracted mangrove forest areas on the SRTM DEM using Landsat based landcover maps. The LiDAR (Light Detection and Ranging) measurements from the large footprint GLAS sensor were used to derive local estimates of canopy height and calibrate the Interferometric Synthetic Aperture Radar (InSAR) data from SRTM. We then applied allometric equations relating canopy height to biomass in order to estimate above ground biomass (AGB) from the canopy height product. The total mangrove area of Africa was estimated to be 25 960 square kilometers with 83% accuracy. The largest mangrove areas and greatest total biomass was 29 found in Nigeria covering 8 573 km2 with 132 x10(exp 6) Mg AGB. Canopy height across Africa was estimated with an overall root mean square error of 3.55 m. This error also includes the impact of using sensors with different resolutions and geolocation error which make comparison between measurements sensitive to canopy heterogeneities. This study provides the first systematic estimates of mangrove area, height and biomass in Africa. Our results showed that the combination of ICEsat/GLAS and SRTM data is well suited for vegetation 3-D mapping on a continental scale

The infrared imaging spectrograph (IRIS) for TMT: sensitivities and simulations

We present sensitivity estimates for point and resolved astronomical sources for the current design of the InfraRed Imaging Spectrograph (IRIS) on the future Thirty Meter Telescope (TMT). IRIS, with TMT's adaptive optics system, will achieve unprecedented point source sensitivities in the near-infrared (0.84 - 2.45 {\mu}m) when compared to systems on current 8-10m ground based telescopes. The IRIS imager, in 5 hours of total integration, will be able to perform a few percent photometry on 26 - 29 magnitude (AB) point sources in the near-infrared broadband filters (Z, Y, J, H, K). The integral field spectrograph, with a range of scales and filters, will achieve good signal-to-noise on 22 - 26 magnitude (AB) point sources with a spectral resolution of R=4,000 in 5 hours of total integration time. We also present simulated 3D IRIS data of resolved high-redshift star forming galaxies (1 < z < 5), illustrating the extraordinary potential of this instrument to probe the dynamics, assembly, and chemical abundances of galaxies in the early universe. With its finest spatial scales, IRIS will be able to study luminous, massive, high-redshift star forming galaxies (star formation rates ~ 10 - 100 M yr-1) at ~100 pc resolution. Utilizing the coarsest spatial scales, IRIS will be able to observe fainter, less massive high-redshift galaxies, with integrated star formation rates less than 1 M yr-1, yielding a factor of 3 to 10 gain in sensitivity compared to current integral field spectrographs. The combination of both fine and coarse spatial scales with the diffraction-limit of the TMT will significantly advance our understanding of early galaxy formation processes and their subsequent evolution into presentday galaxies.Comment: SPIE Astronomical Instrumentation 201

The Infrared Imaging Spectrograph (IRIS) for TMT: the atmospheric dispersion corrector

We present a conceptual design for the atmospheric dispersion corrector (ADC) for TMT's Infrared Imaging Spectrograph (IRIS). The severe requirements of this ADC are reviewed, as are limitations to observing caused by uncorrectable atmospheric effects. The requirement of residual dispersion less than 1 milliarcsecond can be met with certain glass combinations. The design decisions are discussed and the performance of the design ADC is described. Alternative options and their performance tradeoffs are also presented.Comment: SPIE Astronomical Instrumentation 201

The Infrared Imaging Spectrograph (IRIS) for TMT: Volume phase holographic grating performance testing and discussion

Maximizing the grating efficiency is a key goal for the first light instrument IRIS (Infrared Imaging Spectrograph) currently being designed to sample the diffraction limit of the TMT (Thirty Meter Telescope). Volume Phase Holographic (VPH) gratings have been shown to offer extremely high efficiencies that approach 100% for high line frequencies (i.e., 600 to 6000l/mm), which has been applicable for astronomical optical spectrographs. However, VPH gratings have been less exploited in the near-infrared, particularly for gratings that have lower line frequencies. Given their potential to offer high throughputs and low scattered light, VPH gratings are being explored for IRIS as a potential dispersing element in the spectrograph. Our team has procured near-infrared gratings from two separate vendors. We have two gratings with the specifications needed for IRIS current design: 1.51-1.82{\mu}m (H-band) to produce a spectral resolution of 4000 and 1.19- 1.37 {\mu}m (J-band) to produce a spectral resolution of 8000. The center wavelengths for each grating are 1.629{\mu}m and 1.27{\mu}m, and the groove densities are 177l/mm and 440l/mm for H-band R=4000 and J-band R=8000, respectively. We directly measure the efficiencies in the lab and find that the peak efficiencies of these two types of gratings are quite good with a peak efficiency of ~88% at the Bragg angle in both TM and TE modes at H-band, and 90.23% in TM mode, 79.91% in TE mode at J-band for the best vendor. We determine the drop in efficiency off the Bragg angle, with a 20-23% decrease in efficiency at H-band when 2.5 degree deviation from the Bragg angle, and 25%-28% decrease at J-band when 5{\deg} deviation from the Bragg angle.Comment: Proceedings of the SPIE, 9147-33

Tests of the Las Campanas Distant Cluster Survey from Confirmation Observations for the ESO Distant Cluster Survey

The ESO Distant Cluster Survey (EDisCS) is a photometric and spectroscopic study of the galaxy cluster population at two epochs, z~0.5 and z~0.8, drawn from the Las Campanas Distant Cluster Survey (LCDCS). We report results from the initial candidate confirmation stage of the program and use these results to probe the properties of the LCDCS. Of the 30 candidates targeted, we find statistically significant overdensities of red galaxies near 28. Of the ten additional candidates serendipitously observed within the fields of the targeted 30, we detect red galaxy overdensities near six. We test the robustness of the published LCDCS estimated redshifts to misidentification of the brighest cluster galaxy (BCG) in the survey data, and measure the spatial alignment of the published cluster coordinates, the peak red galaxy overdensity, and the brightest cluster galaxy. We conclude that for LCDCS clusters out to z~0.8, 1) the LCDCS coordinates agree with the centroid of the red galaxy overdensity to within 25'' (~150 h^{-1} kpc) for 34 out of 37 candidates with 3\sigma galaxy overdensities, 2) BCGs are typically coincident with the centroid of the red galaxy population to within a projected separation of 200 h^{-1} kpc (32 out of 34 confirmed candidates), 3) the red galaxy population is strongly concentrated, and 4) the misidentification of the BCG in the LCDCS causes a redshift error >0.1 in 15-20% of the LCDCS candidates. These findings together help explain the success of the surface brightness fluctuations detection method.Comment: 10 pages, 9 figures, accepted for publication in the November 10 issue of Ap

The InfraRed Imaging Spectrograph (IRIS) for TMT: Reflective ruled diffraction grating performance testing and discussion

We present the efficiency of near-infrared reflective ruled diffraction gratings designed for the InfraRed Imaging Spectrograph (IRIS). IRIS is a first light, integral field spectrograph and imager for the Thirty Meter Telescope (TMT) and narrow field infrared adaptive optics system (NFIRAOS). We present our experimental setup and analysis of the efficiency of selected reflective diffraction gratings. These measurements are used as a comparison sample against selected candidate Volume Phase Holographic (VPH) gratings (see Chen et al., this conference). We investigate the efficiencies of five ruled gratings designed for IRIS from two separate vendors. Three of the gratings accept a bandpass of 1.19-1.37 {\mu}m (J band) with ideal spectral resolutions of R=4000 and R=8000, groove densities of 249 and 516 lines/mm, and blaze angles of 9.86 and 20.54 degrees, respectively. The other two gratings accept a bandpass of 1.51-1.82 {\mu}m (H Band) with an ideal spectral resolution of R=4000, groove density of 141 lines/mm, and blaze angle of 9.86{\deg}. We measure the efficiencies off blaze angle for all gratings and the efficiencies between the polarization transverse magnetic (TM) and transverse electric (TE) states. The peak reflective efficiencies are 98.90 +/- 3.36% (TM) and 84.99 +/- 2.74% (TM) for the H-band R=4000 and J-band R=4000 respectively. The peak reflective efficiency for the J-band R=8000 grating is 78.78 +/- 2.54% (TE). We find that these ruled gratings do not exhibit a wide dependency on incident angle within +/-3{\deg}. Our best-manufactured gratings were found to exhibit a dependency on the polarization state of the incident beam with a ~10-20% deviation, consistent with the theoretical efficiency predictions.Comment: Proceedings of the SPIE, 9147-34

The Galaxy Populations of X-Ray Detected, Poor Groups

(Abridged) We determine the quantitative morphology and star formation properties of galaxies in six nearby X-ray detected, poor groups using multi-object spectroscopy and wide-field R imaging. We measure structural parameters for each galaxy by fitting a PSF-convolved, two component model to their surface brightness profiles. To compare directly the samples, we fade, smooth, and rebin each galaxy image so that we effectively observe each galaxy at the same redshift (9000 km/s) and physical resolution (0.87h^(-1) kpc). We compare results for the groups to a sample of field galaxies. We find that: 1) Galaxies spanning a wide range in morphological type and luminosity are well-fit by a de Vaucouleurs bulge with exponential disk profile. 2) Morphologically classifying these nearby group galaxies by their bulge fraction (B/T) is fairly robust on average, even when their redshift has increased by up to a factor of four and the effective resolution of the images is degraded by up to a factor of five. 3) The fraction of bulge-dominated systems in these groups is higher than in the field (~50% vs. ~20%). 4) The fraction of bulge-dominated systems in groups decreases with increasing radius, similar to the morphology-radius (~density) relation observed in galaxy clusters. 5) Current star formation in group galaxies is correlated with significant morphological asymmetry for disk-dominated systems (B/T<0.4). 6) The group galaxies that are most disk-dominated (B/T<0.2) are less star forming and asymmetric on average than their counterparts in the field.Comment: Accepted for publication in the Astrophysical Journal (26 pages + 12 figures); Figs 1 & 2 also available at http://www.ucolick.org/~vy/astronomy/groups_figs.tar.g