BLITZEN: A highly integrated massively parallel machine

The architecture and VLSI design of a new massively parallel processing array chip are described. The BLITZEN processing element array chip, which contains 1.1 million transistors, serves as the basis for a highly integrated, miniaturized, high-performance, massively parallel machine that is currently under development. Each processing element has 1K bits of static RAM and performs bit-serial processing with functional elements for arithmetic, logic, and shifting

Fcc-bcc transition for Yukawa interactions determined by applied strain deformation

Calculations of the work required to transform between bcc and fcc phases yield a high-precision bcc-fcc transition line for monodisperse point Yukawa (screened-Couloumb) systems. Our results agree qualitatively but not quantitatively with previously published simulations and phenomenological criteria for the bcc-fcc transition. In particular, the bcc-fcc-fluid triple point lies at a higher inverse screening length than previously reported.Comment: RevTex4, 9 pages, 6 figures. Discussion of phase coexistence extended, a few other minor clarifications added, referencing improved. Accepted for publication by Physical Review

Electronic Theory for the Nonlinear Magneto-Optical Response of Transition-Metals at Surfaces and Interfaces: Dependence of the Kerr-Rotation on Polarization and on the Magnetic Easy Axis

We extend our previous study of the polarization dependence of the nonlinear optical response to the case of magnetic surfaces and buried magnetic interfaces. We calculate for the longitudinal and polar configuration the nonlinear magneto-optical Kerr rotation angle. In particular, we show which tensor elements of the susceptibilities are involved in the enhancement of the Kerr rotation in nonlinear optics for different configurations and we demonstrate by a detailed analysis how the direction of the magnetization and thus the easy axis at surfaces and buried interfaces can be determined from the polarization dependence of the nonlinear magneto-optical response, since the nonlinear Kerr rotation is sensitive to the electromagnetic field components instead of merely the intensities. We also prove from the microscopic treatment of spin-orbit coupling that there is an intrinsic phase difference of 90$^{\circ }$ between tensor elements which are even or odd under magnetization reversal in contrast to linear magneto-optics. Finally, we compare our results with several experiments on Co/Cu films and on Co/Au and Fe/Cr multilayers. We conclude that the nonlinear magneto-optical Kerr-effect determines uniquely the magnetic structure and in particular the magnetic easy axis in films and at multilayer interfaces.Comment: 23 pages Revtex, preprintstyle, 2 uuencoded figure

A mechanical Turing machine: blueprint for a biomolecular computer

We describe a working mechanical device that embodies the theoretical computing machine of Alan Turing, and as such is a universal programmable computer. The device operates on three-dimensional building blocks by applying mechanical analogues of polymer elongation, cleavage and ligation, movement along a polymer, and control by molecular recognition unleashing allosteric conformational changes. Logically, the device is not more complicated than biomolecular machines of the living cell, and all its operations are part of the standard repertoire of these machines; hence, a biomolecular embodiment of the device is not infeasible. If implemented, such a biomolecular device may operate in vivo, interacting with its biochemical environment in a program-controlled manner. In particular, it may ‘compute’ synthetic biopolymers and release them into its environment in response to input from the environment, a capability that may have broad pharmaceutical and biological applications

Quantitative atomic spectroscopy for primary thermometry

Quantitative spectroscopy has been used to measure accurately the Doppler-broadening of atomic transitions in $^{85}$Rb vapor. By using a conventional platinum resistance thermometer and the Doppler thermometry technique, we were able to determine $k_B$ with a relative uncertainty of $4.1\times 10^{-4}$, and with a deviation of $2.7\times 10^{-4}$ from the expected value. Our experiment, using an effusive vapour, departs significantly from other Doppler-broadened thermometry (DBT) techniques, which rely on weakly absorbing molecules in a diffusive regime. In these circumstances, very different systematic effects such as magnetic sensitivity and optical pumping are dominant. Using the model developed recently by Stace and Luiten, we estimate the perturbation due to optical pumping of the measured $k_B$ value was less than $4\times 10^{-6}$. The effects of optical pumping on atomic and molecular DBT experiments is mapped over a wide range of beam size and saturation intensity, indicating possible avenues for improvement. We also compare the line-broadening mechanisms, windows of operation and detection limits of some recent DBT experiments

Shannon Meets Carnot: Generalized Second Thermodynamic Law

The classical thermodynamic laws fail to capture the behavior of systems with energy Hamiltonian which is an explicit function of the temperature. Such Hamiltonian arises, for example, in modeling information processing systems, like communication channels, as thermal systems. Here we generalize the second thermodynamic law to encompass systems with temperature-dependent energy levels, $dQ=TdS+dT$, where $$ denotes averaging over the Boltzmann distribution and reveal a new definition to the basic notion of temperature. This generalization enables to express, for instance, the mutual information of the Gaussian channel as a consequence of the fundamental laws of nature - the laws of thermodynamics

Monte Carlo simulation with time step quantification in terms of Langevin dynamics

For the description of thermally activated dynamics in systems of classical magnetic moments numerical methods are desirable. We consider a simple model for isolated magnetic particles in a uniform field with an oblique angle to the easy axis of the particles. For this model, a comparison of the Monte Carlo method with Langevin dynamics yields new insight in the interpretation of the Monte Carlo process, leading to the implementation of a new algorithm where the Monte Carlo step is time-quantified. The numeric results for the characteristic time of the magnetisation reversal are in excellent agreement with asymptotic solutions which itself are in agreement with the exact numerical results obtained from the Fokker-Planck equation for the Neel-Brown model.Comment: 5 pages, Revtex, 4 Figures include

A quantum solution to the arrow-of-time dilemma

The arrow of time dilemma: the laws of physics are invariant for time inversion, whereas the familiar phenomena we see everyday are not (i.e. entropy increases). I show that, within a quantum mechanical framework, all phenomena which leave a trail of information behind (and hence can be studied by physics) are those where entropy necessarily increases or remains constant. All phenomena where the entropy decreases must not leave any information of their having happened. This situation is completely indistinguishable from their not having happened at all. In the light of this observation, the second law of thermodynamics is reduced to a mere tautology: physics cannot study those processes where entropy has decreased, even if they were commonplace.Comment: Contains slightly more material than the published version (the additional material is clearly labeled in the latex source). Because of PRL's title policy, the leading "A" was left out of the title in the published pape

Prevalence and Infection Load Dynamics of Rickettsia felis in Actively Feeding Cat Fleas

Background: Rickettsia felis is a flea-associated rickettsial pathogen recurrently identified in both colonized and wild-caught cat fleas, Ctenocephalides felis. We hypothesized that within colonized fleas, the intimate relationship between R. felis and C. felis allows for the coordination of rickettsial replication and metabolically active periods during flea bloodmeal acquisition and oogenesis. Methodology/Principal Findings: A quantitative real-time PCR assay was developed to quantify R. felis in actively feeding R. felis-infected fleas. In three separate trials, fleas were allowed to feed on cats, and a mean of 3.9610 6 R. felis 17-kDa gene copies was detected for each flea. A distinct R. felis infection pattern was not observed in fleas during nine consecutive days of bloodfeeding. However, an inverse correlation between the prevalence of R. felis-infection, which ranged from 96 % in Trial 1 to 35 % in Trial 3, and the R. felis-infection load in individual fleas was identified. Expression of R. felis-infection load as a ratio of R. felis/C. felis genes confirmed that fleas in Trial 3 had significantly greater rickettsial loads than those in Trial 1. Conclusion/Significance: Examining rickettsial infection dynamics in the flea vector will further elucidate the intimate relationship between R. felis and C. felis, and facilitate a more accurate understanding of the ecology and epidemiology of R. felis transmission in nature

Continuous Time Monte Carlo and Spatial Ordering in Driven Lattice Gases: Application to Driven Vortices in Periodic Superconducting Networks

We consider the two dimensional (2D) classical lattice Coulomb gas as a model for magnetic field induced vortices in 2D superconducting networks. Two different dynamical rules are introduced to investigate driven diffusive steady states far from equilibrium as a function of temperature and driving force. The resulting steady states differ dramatically depending on which dynamical rule is used. We show that the commonly used driven diffusive Metropolis Monte Carlo dynamics contains unphysical intrinsic randomness that destroys the spatial ordering present in equilibrium (the vortex lattice) over most of the driven phase diagram. A continuous time Monte Carlo (CTMC) is then developed, which results in spatially ordered driven states at low temperature in finite sized systems. We show that CTMC is the natural discretization of continuum Langevin dynamics, and argue that it gives the correct physical behavior when the discrete grid represents the minima of a periodic potential. We use detailed finite size scaling methods to analyze the spatial structure of the steady states. We find that finite size effects can be subtle and that very long simulation times can be needed to arrive at the correct steady state. For particles moving on a triangular grid, we find that the ordered moving state is a transversely pinned smectic that becomes unstable to an anisotropic liquid on sufficiently large length scales. For particles moving on a square grid, the moving state is a similar smectic at large drives, but we find evidence for a possible moving solid at lower drives. We find that the driven liquid on the square grid has long range hexatic order, and we explain this as a specifically non-equilibrium effect. We show that, in the liquid, fluctuations are diffusive in both the transverse and longitudinal directions.Comment: 29 pages, 35 figure