Field-induced Confined States in Graphene

We report an approach to confine the carriers in single-layer graphene, which leads to quantum devices with field-induced quantum confinement. We demonstrated that the Coulomb-blockade effect evolves under a uniform magnetic field perpendicular to the graphene device. Our experimental results show that field-induced quantum dots are realized in graphene, and a quantum confinement-deconfinement transition is switched by the magnetic field

Biotechnology Processes for Scalable, Selective Rare Earth Element Recovery

Biorecovery of rare earth elements (REE) from wastes and ores is achieved by bacteria using biogenic phosphates. One approach uses an enzyme that biomineralises REE phosphate crystals into the extracellular polymeric matrix (EPM). The enzyme, co-localised in the EPM, provides a continuous phosphate feed into biomineralisation. The bacteria can be immobilised in a column, allowing continuous metal removal. Metals biocrystallise at different rates. By choosing suitable conditions and column flow rates selective recovery of REE against uranium and thorium can potentially overcome a bottleneck in recovery of REE from mine tailings and ore leachates co-contaminated with these radionuclides. Another approach to REE recovery first lays down calcium phosphate as hydroxyapatite (Bio-HA) using the enzymatic process. Bio-HA then captures REE, loading REE of up to 84% of the HA-mass. REE3+ first localises at the grain boundaries of the small bio-crystallites and then substitutes for Ca2+ stoichiometrically within the HA. After REE capture the bio-HA/REE hybrid can be separated magnetically. A wider concept: using a ‘priming’ deposit of one mineral to facilitate the capture of REEs, has been shown, potentially providing a basis for selective REE recovery which would provide advantages over the > 100 steps currently used in commercial REE refining

Fluctuation of the Top Location and Avalanches in the Formation Process of a Sandpile

We investigate the formation processes of a sandpile using numerical simulation. We find a new relation between the fluctuation of the motion of the top and the surface state of a sandpile. The top moves frequently as particles are fed one by one every time interval T. The time series of the top location has the power spectrum which obeys a power law, S(f)~f^{\alpha}, and its exponent \alpha depends on T and the system size w. The surface state is characterized by two time scales; the lifetime of an avalanche, T_{a}, and the time required to cause an avalanche, T_{s}. The surface state is fluid-like when T_{a}~T_{s}, and it is solid-like when T_{a}<<T_{s}. Our numerical results show that \alpha is a function of T_{s}/T_{a}.Comment: 15 pages, 13 figure

Epistasis Among Adaptive Mutations in Deer Mouse Hemoglobin

Epistatic interactions between mutant sites in the same protein can exert a strong influence on pathways of molecular evolution. We performed protein engineering experiments that revealed pervasive epistasis among segregating amino acid variants that contribute to adaptive functional variation in deer mouse hemoglobin (Hb). Amino acid mutations increased or decreased Hb-O2 affinity depending on the allelic state of other sites. Structural analysis revealed that epistasis for Hb-O2 affinity and allosteric regulatory control is attributable to indirect interactions between structurally remote sites. The prevalence of sign epistasis for fitness-related biochemical phenotypes has important implications for the evolutionary dynamics of protein polymorphism in natural populations

The mechanistic basis of hemoglobin adaptation in the high-flying barheaded goose: insights from ancestral protein resurrection

The bar-headed goose (‘BHG’, Anser indicus) is renowned for its trans-Himalayan migratory flights, and the elevated hemoglobin (Hb)-O2 affinity of this species is thought to make a key contribution to its capacity for powered flight at elevations of ~9000 m. Here we revisit the molecular basis of this text-book example of biochemical adaptation. Previous hypotheses about the molecular basis of the evolved increase in Hb-O2 affinity were tested by engineering BHGspecific mutations into recombinant human Hb. This approach can provide important insights, but one problem with such ‘horizontal’ comparisons – swapping residues between proteins of contemporary species – is that the focal mutations are introduced into a sequence context that may not be evolutionarily relevant. If mutations have context-dependent effects, then introducing BHG-specific substitutions into human Hb may not recapitulate the functional effects of causative mutations on the genetic background in which they actually occurred during evolution (i.e., in the BHG ancestor). An alternative ‘vertical’ approach is to reconstruct and resurrect ancestral proteins to test the effects of historical mutations on the genetic background in which they actually occurred. We used this approach to measure the independent and joint effects of amino acid substitutions that occurred in the reconstructed BHG ancestor. Measuring the additive and nonadditive effects of these substitutions enabled us to address several important evolutionary questions about molecular adaptation: (1) Do each of the substitutions contribute to the increased Hb-O2 affinity? If so, what are their relative effects? (2) Does the sequential order in which they occur make a difference? In other words, do the functional effects of mutations depend on which other substitutions have already occurred

The mechanistic basis of hemoglobin adaptation in the high-flying barheaded goose: insights from ancestral protein resurrection

The bar-headed goose (‘BHG’, Anser indicus) is renowned for its trans-Himalayan migratory flights, and the elevated hemoglobin (Hb)-O2 affinity of this species is thought to make a key contribution to its capacity for powered flight at elevations of ~9000 m. Here we revisit the molecular basis of this text-book example of biochemical adaptation. Previous hypotheses about the molecular basis of the evolved increase in Hb-O2 affinity were tested by engineering BHGspecific mutations into recombinant human Hb. This approach can provide important insights, but one problem with such ‘horizontal’ comparisons – swapping residues between proteins of contemporary species – is that the focal mutations are introduced into a sequence context that may not be evolutionarily relevant. If mutations have context-dependent effects, then introducing BHG-specific substitutions into human Hb may not recapitulate the functional effects of causative mutations on the genetic background in which they actually occurred during evolution (i.e., in the BHG ancestor). An alternative ‘vertical’ approach is to reconstruct and resurrect ancestral proteins to test the effects of historical mutations on the genetic background in which they actually occurred. We used this approach to measure the independent and joint effects of amino acid substitutions that occurred in the reconstructed BHG ancestor. Measuring the additive and nonadditive effects of these substitutions enabled us to address several important evolutionary questions about molecular adaptation: (1) Do each of the substitutions contribute to the increased Hb-O2 affinity? If so, what are their relative effects? (2) Does the sequential order in which they occur make a difference? In other words, do the functional effects of mutations depend on which other substitutions have already occurred

Classical Exchange Algebra of the Superstring on S^5 with the AdS-time

A classical exchange algebra of the superstring on S^5 with the AdS-time is shown on the light-like plane. To this end we use the geometrical method of which consistency is guaranteed by the classical Yang-Baxter equation. The Dirac method does not work, there being constraints which contain first-class and second-class and one can disentangle with each other keeping the isometry hardly.Comment: 12 pages, v2: argument on alternative representation of S^5 spherical functions added, typos corrected, one reference added, matches journal versio

Non-Linear/Non-Commutative Non-Abelian Monopoles

Using recently proposed non-linearly realized supersymmetry in non-Abelian gauge theory corrected to the order (alpha')^2, we derive the non-linear BPS equations in the background B-field for the U(2) monopoles and instantons. We show that these non-Abelian non-linear BPS equations coincide with the non-commutative anti-self-dual equations via the Seiberg-Witten map.Comment: 9 pages, LaTe

Search for solar axions using Li-7

We describe a novel approach to the search for solar, near-monochromatic hadronic axions, the latter being suggested to be created in the solar core during M1 transitions between the first excited level of Li-7, at 478 keV, and the ground state. As a result of Doppler broadening, in principle these axions can be detected via resonant absorption by the same nuclide on the Earth. Excited nuclei of Li-7 are produced in the solar interior by Be-7 electron capture and thus the axions are accompanied by emission of Be-7 solar neutrinos of energy 384 keV. An experiment was made which has yielded an upper limit on hadronic axion mass of 32 keV at the 95% confidence level.Comment: revtex, 4 pages with 2 figures, title revised, minor changes, matches version to appear in Phys. Rev.