The Great War and the American Novel: Mimesis and Craft in Selected Fiction of Dos Passos, Boyd, March, and Hemingway

This dissertation examines the influence of World War I on American literature and its effects on the American tradition of literary realism. It does so through an analysis of five war novels written by four American authors who had participated in the conflict as combatants or volunteers. These works include John Dos Passos\u27 One Man\u27s Initiation--1917 and Three Soldiers, Thomas Boyd\u27s Through the Wheat, William March\u27s Company K, and Ernest Hemingway\u27s A Farewell to Arms. The dissertation explores a development within the sub-genre of war novels from works of witness and testimony, which were based on the authors\u27 personal experiences in the First World War, to more finely crafted works of fiction, which employed carefully developed characterizations, plots, and themes. Especially with the first of these war novels, those of witness and testimony, a new narrative form was evident. These novels such as Dos Passos\u27 One Man\u27s Initiation--1917 and Boyd\u27s Through the Wheat combined elements of fiction and non-fiction and are near-journalistic in their presentation of events witnessed by the authors during the Great War. Thus, they presage the non-fictional novel of the 1960s. With Dos Passos\u27 Three Soldiers and the war novels of March and Hemingway, concern with the novel as art is more evident. The later war novels also employ more complex narrative points of view. This widening of perspective allows a varied and complex presentation of the events of the Great War, but also results in greater ambiguity and irony. Another area explored in this study is the accuracy of the mimetic re-creation of the Great War\u27s conditions. Especially in the earliest war novels, graphic descriptions of the war\u27s events are often depicted as a means of protest. However, even the later war novelists attempt to portray the war with some degree of verisimilitude, and collectively, these five war novels provide an often minutely accurate re-creation of the First World War. Because of their use of mimesis, their innovative combination of fiction and non-fiction, and their influence on later writers, these war novels represent an important development in twentieth-century American literature

Interfaces in Diblocks: A Study of Miktoarm Star Copolymers

We study AB$_n$ miktoarm star block copolymers in the strong segregation limit, focussing on the role that the AB interface plays in determining the phase behavior. We develop an extension of the kinked-path approach which allows us to explore the energetic dependence on interfacial shape. We consider a one-parameter family of interfaces to study the columnar to lamellar transition in asymmetric stars. We compare with recent experimental results. We discuss the stability of the A15 lattice of sphere-like micelles in the context of interfacial energy minimization. We corroborate our theory by implementing a numerically exact self-consistent field theory to probe the phase diagram and the shape of the AB interface.Comment: 12 pages, 11 included figure

Strong-Segregation Theory of Bicontinuous Phases in Block Copolymers

We compute phase diagrams for $A_nB_m$ starblock copolymers in the strong-segregation regime as a function of volume fraction $\phi$, including bicontinuous phases related to minimal surfaces (G, D, and P surfaces) as candidate structures. We present the details of a general method to compute free energies in the strong segregation limit, and demonstrate that the gyroid G phase is the most nearly stable among the bicontinuous phases considered. We explore some effects of conformational asymmetry on the topology of the phase diagram.Comment: 14 pages, latex, 21 figures, to appear in Macromolecule

The non-centrosymmetric lamellar phase in blends of ABC triblock and ac diblock copolymers

The phase behaviour of blends of ABC triblock and ac diblock copolymers is examined using self-consistent field theory. Several equilibrium lamellar structures are observed, depending on the volume fraction of the diblocks, phi_2, the monomer interactions, and the degrees of polymerization of the copolymers. For segregations just above the order-disorder transition the triblocks and diblocks mix together to form centrosymmetric lamellae. As the segregation is increased the triblocks and diblocks spatially separate either by macrophase-separating, or by forming a non-centrosymmetric (NCS) phase of alternating layers of triblock and diblock (...ABCcaABCca...). The NCS phase is stable over a narrow region near phi_2=0.4. This region is widest near the critical point on the phase coexistence curve and narrows to terminate at a triple point at higher segregation. Above the triple point there is two-phase coexistence between almost pure triblock and diblock phases. The theoretical phase diagram is consistent with experiments.Comment: 9 pages, 8 figures, submitted to Macromolecule

PhyloSift: Phylogenetic analysis of genomes and metagenomes

Like all organisms on the planet, environmental microbes are subject to the forces of molecular evolution. Metagenomic sequencing provides a means to access the DNA sequence of uncultured microbes. By combining DNA sequencing of microbial communities with evolutionary modeling and phylogenetic analysis we might obtain new insights into microbiology and also provide a basis for practical tools such as forensic pathogen detection. In this work we present an approach to leverage phylogenetic analysis of metagenomic sequence data to conduct several types of analysis. First, we present a method to conduct phylogeny-driven Bayesian hypothesis tests for the presence of an organism in a sample. Second, we present a means to compare community structure across a collection of many samples and develop direct associations between the abundance of certain organisms and sample metadata. Third, we apply new tools to analyze the phylogenetic diversity of microbial communities and again demonstrate how this can be associated to sample metadata. These analyses are implemented in an open source software pipeline called PhyloSift. As a pipeline, PhyloSift incorporates several other programs including LAST, HMMER, and pplacer to automate phylogenetic analysis of protein coding and RNA sequences in metagenomic datasets generated by modern sequencing platforms (e.g., Illumina, 454). © 2014 Darling et al

Reconciling taxonomy and phylogenetic inference: formalism and algorithms for describing discord and inferring taxonomic roots

Although taxonomy is often used informally to evaluate the results of phylogenetic inference and find the root of phylogenetic trees, algorithmic methods to do so are lacking. In this paper we formalize these procedures and develop algorithms to solve the relevant problems. In particular, we introduce a new algorithm that solves a "subcoloring" problem for expressing the difference between the taxonomy and phylogeny at a given rank. This algorithm improves upon the current best algorithm in terms of asymptotic complexity for the parameter regime of interest; we also describe a branch-and-bound algorithm that saves orders of magnitude in computation on real data sets. We also develop a formalism and an algorithm for rooting phylogenetic trees according to a taxonomy. All of these algorithms are implemented in freely-available software.Comment: Version submitted to Algorithms for Molecular Biology. A number of fixes from previous versio

Phase diagram for diblock copolymer melts under cylindrical confinement

We extensively study the phase diagram of a diblock copolymer melt confined in a cylindrical nanopore using real-space self-consistent mean-field theory. We discover a rich variety of new two-dimensional equilibrium structures that have no analog in the unconfined system. These include non-hexagonally coordinated cylinder phases and structures intermediate between lamellae and cylinders. We map the stability regions and phase boundaries for all the structures we find. As the pore radius is decreased, the pore accommodates fewer cylindrical domains and structural transitions occur as cylinders are eliminated. Our results are consistent with experiments, but we also predict phases yet to be observed.Comment: 12 pages, 3 figures. submitted to Physical Review Letter

New Method for Phase transitions in diblock copolymers: The Lamellar case

A new mean-field type theory is proposed to study order-disorder transitions (ODT) in block copolymers. The theory applies to both the weak segregation (WS) and the strong segregation (SS) regimes. A new energy functional is proposed without appealing to the random phase approximation (RPA). We find new terms unaccounted for within RPA. We work out in detail transitions to the lamellar state and compare the method to other existing theories of ODT and numerical simulations. We find good agreements with recent experimental results and predict that the intermediate segregation regime may have more than one scaling behavior.Comment: 23 pages, 8 figure

Partial integration and local mean-field approach for a vector lattice model of microemulsions

A vector model on the simple cubic lattice, describing a mixture of water, oil, and amphiphile, is considered. An integration over the amphiphile orientational degrees of freedom is performed exactly in order to obtain an effective Hamiltonian for the system. The resulting model is a three-state (spin-1) system and contains many-site interaction terms. The analysis of the ground state reveals the presence of the water-oil-rich phase as well as the amphiphile-rich and the cubic phases. The temperature phase diagram of the system is analyzed in a local mean-field approach, and a triple line of water-rich, oil-rich, and microemulsion coexistence is obtained. For some values of the model parameters, lamellar phases also appear in the system, but only at finite temperature. The Lifshitz line is determined in a semianalytical way in order to locate the microemulsion region of the disordered phase