250 research outputs found
Fully coupled simulations of non-colloidal monodisperse sheared suspensions
In this work we investigate numerically the dynamics of sheared suspensions in the limit of vanishingly small fluid and particle inertia. The numerical model we used is able to handle the multi-body hydrodynamic interactions between thousands of particles embedded in a linear shear flow. The presence of the particles is modeled by momentum source terms spread out on a spherical envelop forcing the Stokes equations of the creeping flow. Therefore all the velocity perturbations induced by the moving particles are simultaneously accounted for.
The statistical properties of the sheared suspensions are related to the velocity fluctuation of the particles. We formed averages for the resulting velocity fluctuation and rotation rate tensors. We found that the latter are highly anisotropic and that all the velocity fluctuation terms grow linearly with particle volume fraction. Only one off-diagonal term is found to be non zero (clearly related to trajectory symmetry breaking induced by the non-hydrodynamic repulsion force). We also found a strong correlation of positive/negative velocities in the shear plane, on a time scale controlled by the shear rate (direct interaction of two particles). The time scale required to restore uncorrelated velocity fluctuations decreases continuously as the concentration increases. We calculated the shear induced self-diffusion coefficients using two different methods and the resulting diffusion tensor appears to be anisotropic too.
The microstructure of the suspension is found to be drastically modified by particle interactions. First the probability density function of velocity fluctuations showed a transition from exponential to Gaussian behavior as particle concentration varies. Second the probability of finding close pairs while the particles move under shear flow is strongly enhanced by hydrodynamic interactions when the concentration increases
Ion pump activity generates fluctuating electrostatic forces in biomembranes
We study the non-equilibrium dynamics of lipid membranes with proteins that
actively pump ions across the membrane. We find that the activity leads to a
fluctuating force distribution due to electrostatic interactions arising from
variation in dielectric constant across the membrane. By applying a multipole
expansion we find effects on both the tension and bending rigidity dominated
parts of the membranes fluctuation spectrum. We discuss how our model compares
with previous studies of force-multipole models.Comment: 6 pages, 2 figures, to appear in EP
Descriptions of membrane mechanics from microscopic and effective two-dimensional perspectives
Mechanics of fluid membranes may be described in terms of the concepts of
mechanical deformations and stresses, or in terms of mechanical free-energy
functions. In this paper, each of the two descriptions is developed by viewing
a membrane from two perspectives: a microscopic perspective, in which the
membrane appears as a thin layer of finite thickness and with highly
inhomogeneous material and force distributions in its transverse direction, and
an effective, two-dimensional perspective, in which the membrane is treated as
an infinitely thin surface, with effective material and mechanical properties.
A connection between these two perspectives is then established. Moreover, the
functional dependence of the variation in the mechanical free energy of the
membrane on its mechanical deformations is first studied in the microscopic
perspective. The result is then used to examine to what extent different,
effective mechanical stresses and forces can be derived from a given, effective
functional of the mechanical free energy.Comment: 37 pages, 3 figures, minor change
Subdiffusion and weak ergodicity breaking in the presence of a reactive boundary
We derive the boundary condition for a subdiffusive particle interacting with
a reactive boundary with finite reaction rate. Molecular crowding conditions,
that are found to cause subdiffusion of larger molecules in biological cells,
are shown to effect long-tailed distributions with identical exponent for both
the unbinding times from the boundary to the bulk and the rebinding times from
the bulk. This causes a weak ergodicity breaking: typically, an individual
particle either stays bound or remains in the bulk for very long times. We
discuss why this may be beneficial for in vivo gene regulation by DNA-binding
proteins, whose typical concentrations are nanomolarComment: 4 pages, 1 figure, REVTeX4, accepted to Phys Rev Lett, some typos
correcte
Open String Fluctuations in AdS with and without Torsion
The equations of motion and boundary conditions for the fluctuations around a
classical open string, in a curved space-time with torsion, are considered in
compact and world-sheet covariant form. The rigidly rotating open strings in
Anti de Sitter space with and without torsion are investigated in detail. By
carefully analyzing the tangential fluctuations at the boundary, we show
explicitly that the physical fluctuations (which at the boundary are
combinations of normal and tangential fluctuations) are finite, even though the
world-sheet is singular there. The divergent 2-curvature thus seems less
dangerous than expected, in these cases. The general formalism can be
straightforwardly used also to study the (bosonic part of the) fluctuations
around the closed strings, recently considered in connection with the AdS/CFT
duality, on AdS_5 \times S^5 and AdS_3 \times S^3 \times T^4.Comment: 19 pages, Late
Mean first-passage time of surface-mediated diffusion in spherical domains
We present an exact calculation of the mean first-passage time to a target on
the surface of a 2D or 3D spherical domain, for a molecule alternating phases
of surface diffusion on the domain boundary and phases of bulk diffusion. The
presented approach is based on an integral equation which can be solved
analytically. Numerically validated approximation schemes, which provide more
tractable expressions of the mean first-passage time are also proposed. In the
framework of this minimal model of surface-mediated reactions, we show
analytically that the mean reaction time can be minimized as a function of the
desorption rate from the surface.Comment: to appear in J. Stat. Phy
How Landscape Heterogeneity Frames Optimal Diffusivity in Searching Processes
Theoretical and empirical investigations of search strategies typically have failed to distinguish the distinct roles played by density versus patchiness of resources. It is well known that motility and diffusivity of organisms often increase in environments with low density of resources, but thus far there has been little progress in understanding the specific role of landscape heterogeneity and disorder on random, non-oriented motility. Here we address the general question of how the landscape heterogeneity affects the efficiency of encounter interactions under global constant density of scarce resources. We unveil the key mechanism coupling the landscape structure with optimal search diffusivity. In particular, our main result leads to an empirically testable prediction: enhanced diffusivity (including superdiffusive searches), with shift in the diffusion exponent, favors the success of target encounters in heterogeneous landscapes
Weakly non-ergodic Statistical Physics
We find a general formula for the distribution of time averaged observables
for weakly non-ergodic systems. Such type of ergodicity breaking is known to
describe certain systems which exhibit anomalous fluctuations, e.g. blinking
quantum dots and the sub-diffusive continuous time random walk model. When the
fluctuations become normal we recover usual ergodic statistical mechanics.
Examples of a particle undergoing fractional dynamics in a binding force field
are worked out in detail. We briefly discuss possible physical applications in
single particle experiments
Lattice Boltzmann simulations of soft matter systems
This article concerns numerical simulations of the dynamics of particles
immersed in a continuum solvent. As prototypical systems, we consider colloidal
dispersions of spherical particles and solutions of uncharged polymers. After a
brief explanation of the concept of hydrodynamic interactions, we give a
general overview over the various simulation methods that have been developed
to cope with the resulting computational problems. We then focus on the
approach we have developed, which couples a system of particles to a lattice
Boltzmann model representing the solvent degrees of freedom. The standard D3Q19
lattice Boltzmann model is derived and explained in depth, followed by a
detailed discussion of complementary methods for the coupling of solvent and
solute. Colloidal dispersions are best described in terms of extended particles
with appropriate boundary conditions at the surfaces, while particles with
internal degrees of freedom are easier to simulate as an arrangement of mass
points with frictional coupling to the solvent. In both cases, particular care
has been taken to simulate thermal fluctuations in a consistent way. The
usefulness of this methodology is illustrated by studies from our own research,
where the dynamics of colloidal and polymeric systems has been investigated in
both equilibrium and nonequilibrium situations.Comment: Review article, submitted to Advances in Polymer Science. 16 figures,
76 page
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