50 research outputs found
Nonlinear multidimensional scaling and visualization of earthquake clusters over space, time and feature space
International audienceWe present a novel technique based on a multi-resolutional clustering and nonlinear multi-dimensional scaling of earthquake patterns to investigate observed and synthetic seismic catalogs. The observed data represent seismic activities around the Japanese islands during 1997-2003. The synthetic data were generated by numerical simulations for various cases of a heterogeneous fault governed by 3-D elastic dislocation and power-law creep. At the highest resolution, we analyze the local cluster structures in the data space of seismic events for the two types of catalogs by using an agglomerative clustering algorithm. We demonstrate that small magnitude events produce local spatio-temporal patches delineating neighboring large events. Seismic events, quantized in space and time, generate the multi-dimensional feature space characterized by the earthquake parameters. Using a non-hierarchical clustering algorithm and nonlinear multi-dimensional scaling, we explore the multitudinous earthquakes by real-time 3-D visualization and inspection of the multivariate clusters. At the spatial resolutions characteristic of the earthquake parameters, all of the ongoing seismicity both before and after the largest events accumulates to a global structure consisting of a few separate clusters in the feature space. We show that by combining the results of clustering in both low and high resolution spaces, we can recognize precursory events more precisely and unravel vital information that cannot be discerned at a single resolution
Structural Anisotropy in Polar Fluids Subjected to Periodic Boundary Conditions
A heuristic model based on dielectric continuum theory for the long-range solvation free energy of a dipolar system possessing periodic boundary conditions (PBCs) is presented. The predictions of the model are compared to simulation results for Stockmayer fluids simulated using three different cell geometries. The boundary effects induced by the PBCs are shown to lead to anisotropies in the apparent dielectric constant and the long-range solvation free energy of as much as 50%. However, the sum of all of the anisotropic energy contributions yields a value that is very close to the isotropic one derived from dielectric continuum theory, leading to a total system energy close to the dielectric value. It is finally shown that the leading-order contribution to the energetic and structural anisotropy is significantly smaller in the noncubic simulation cell geometries compared to when using a cubic simulation cell
Multi-Particle Collision Dynamics -- a Particle-Based Mesoscale Simulation Approach to the Hydrodynamics of Complex Fluids
In this review, we describe and analyze a mesoscale simulation method for
fluid flow, which was introduced by Malevanets and Kapral in 1999, and is now
called multi-particle collision dynamics (MPC) or stochastic rotation dynamics
(SRD). The method consists of alternating streaming and collision steps in an
ensemble of point particles. The multi-particle collisions are performed by
grouping particles in collision cells, and mass, momentum, and energy are
locally conserved. This simulation technique captures both full hydrodynamic
interactions and thermal fluctuations. The first part of the review begins with
a description of several widely used MPC algorithms and then discusses
important features of the original SRD algorithm and frequently used
variations. Two complementary approaches for deriving the hydrodynamic
equations and evaluating the transport coefficients are reviewed. It is then
shown how MPC algorithms can be generalized to model non-ideal fluids, and
binary mixtures with a consolute point. The importance of angular-momentum
conservation for systems like phase-separated liquids with different
viscosities is discussed. The second part of the review describes a number of
recent applications of MPC algorithms to study colloid and polymer dynamics,
the behavior of vesicles and cells in hydrodynamic flows, and the dynamics of
viscoelastic fluids
Multipolar Reactive DPD: A Novel Tool for Spatially Resolved Systems Biology
This article reports about a novel extension of dissipative particle dynamics
(DPD) that allows the study of the collective dynamics of complex chemical and
structural systems in a spatially resolved manner with a combinatorially
complex variety of different system constituents. We show that introducing
multipolar interactions between particles leads to extended membrane structures
emerging in a self-organized manner and exhibiting both the necessary
mechanical stability for transport and fluidity so as to provide a
two-dimensional self-organizing dynamic reaction environment for kinetic
studies in the context of cell biology. We further show that the emergent
dynamics of extended membrane bound objects is in accordance with scaling laws
imposed by physics.Comment: submitted to CMSB 0