Respiration Strategies Utilized by the Gill Endosymbiont from the Host Lucinid Codakia orbicularis (Bivalvia: Lucinidae)

The large tropical lucinid clam Codakia orbicularis has a symbiotic relationship with intracellular, sulfide-oxidizing chemoautotrophic bacteria. The respiration strategies utilized by the symbiont were explored using integrative techniques on mechanically purified symbionts and intact clam-symbiont associations along with habitat analysis. Previous work on a related symbiont species found in the host lucinid Lucinoma aequizonata showed that the symbionts obligately used nitrate as an electron acceptor, even under oxygenated conditions. In contrast, the symbionts of C. orbicularis use oxygen as the primary electron acceptor while evidence for nitrate respiration was lacking. Direct measurements obtained by using microelectrodes in purified symbiont suspensions showed that the symbionts consumed oxygen; this intracellular respiration was confirmed by using the redox dye CTC (5-cyano-2,3-ditolyl tetrazolium chloride). In the few intact chemosymbioses tested in previous studies, hydrogen sulfide production was shown to occur when the animal-symbiont association was exposed to anoxia and elemental sulfur stored in the thioautotrophic symbionts was proposed to serve as an electron sink in the absence of oxygen and nitrate. However, this is the first study to show by direct measurements using sulfide microelectrodes in enriched symbiont suspensions that the symbionts are the actual source of sulfide under anoxic conditions

Chloroplast His-to-Asp signal transduction: a potential mechanism for plastid gene regulation in <it>Heterosigma akashiwo </it>(Raphidophyceae)

<p>Abstract</p> <p>Background</p> <p>Maintenance of homeostasis requires that an organism perceive selected physical and chemical signals within an informationally dense environment. Functionally, an organism uses a variety of signal transduction arrays to amplify and convert these perceived signals into appropriate gene transcriptional responses. These changes in gene expression serve to modify selective metabolic processes and thus optimize reproductive success. Here we analyze a chloroplast-encoded His-to-Asp signal transduction circuit in the stramenopile <it>Heterosigma akashiwo </it>(Hada) Hada <it>ex </it>Y. Hara <it>et </it>Chihara [syn. <it>H. carterae </it>(Hulburt) F.J.R. Taylor]. The presence, structure and putative function of this protein pair are discussed in the context of their evolutionary homologues.</p> <p>Results</p> <p>Bioinformatic analysis of the <it>Heterosigma akashiwo </it>chloroplast genome sequence revealed the presence of a single two-component His-to-Asp (designated Tsg1/Trg1) pair in this stramenopile (golden-brown alga). These data represent the first documentation of a His-to-Asp array in stramenopiles and counter previous reports suggesting that such regulatory proteins are lacking in this taxonomic cluster. Comparison of the 43 kDa <it>H. akashiwo </it>Tsg1 with bacterial sensor kinases showed that the algal protein exhibits a moderately maintained PAS motif in the sensor kinase domain as well as highly conserved H, N, G₁and F motifs within the histidine kinase ATP binding site. Molecular modelling of the 27 kDa <it>H. akashiwo </it>Trg1 regulator protein was consistent with a winged helix-turn-helix identity – a class of proteins that is known to impact gene expression at the level of transcription. The occurrence of Trg1 protein in actively growing <it>H. akashiwo </it>cells was verified by Western analysis. The presence of a PhoB-like RNA polymerase loop in Trg1 and its homologues in the red-algal lineage support the hypothesis that Trg1 and its homologues interact with a sigma 70 (σ⁷⁰) subunit (encoded by <it>rpoD</it>) of a eubacterial type polymerase. Sequence analysis of <it>H. akashiwo rpoD </it>showed this nuclear-encoded gene has a well-defined 4.2 domain, a region that augments RNA polymerase interaction with transcriptional regulatory proteins and also serves in -35 promoter recognition. The presence/loss of the His-to-Asp pairs in primary and secondary chloroplast lineages is assessed.</p> <p>Conclusion</p> <p>His-to-Asp signal transduction components are found in most rhodophytic chloroplasts, as well as in their putative cyanobacterial progenitors. The evolutionary conservation of these proteins argues that they are important for the maintenance of chloroplast homeostasis. Our data suggest that chloroplast gene transcription may be impacted by the interaction of the His-to-Asp regulator protein (which is less frequently lost than the sensor protein) with the RNA polymerase σ⁷⁰subunit.</p

Chloroplast His-to-Asp signal transduction: a potential mechanism for plastid gene regulation in (Raphidophyceae)-3

<p><b>Copyright information:</b></p><p>Taken from "Chloroplast His-to-Asp signal transduction: a potential mechanism for plastid gene regulation in (Raphidophyceae)"</p><p>http://www.biomedcentral.com/1471-2148/7/70</p><p>BMC Evolutionary Biology 2007;7():70-70.</p><p>Published online 3 May 2007</p><p>PMCID:PMC1885438.</p><p></p>f OmpR (grey), PhoB (white), and the complete receiver-regulator structure from (blue) reveals important similarities. The predicted Trg1 model closely resembles that of OmpR, particularly in the putative DNA binding region (α3 helix). Notably, the predicted Trg1 structure for the putative RNA polymerase interaction site (α-αloop, red) more closely matches that of PhoB. The phosphorylation site is shown as a purple sphere