Report of the Indiana University Research Data Management Taskforce

The “data deluge” in the sciences—the ability to create massive streams of digital data—has been discussed at great length in the academic and lay press. The ability with which scientists can now produce data has transformed scientific practice so that creating data is now less of a challenge in many disciplines than making use of, properly analyzing, and properly storing such data. Two aspects of the data deluge are not as widely appreciated. One is that the data deluge is not contained simply to the sciences. Humanities scholars and artists are generating data at prodigious rates as well through massive scanning projects, digitization of still photographs, video, and music, and the creation of new musical and visual art forms that are inherently digital. A second factor that is not well appreciated is that data collected now is potentially valuable forever. The genomic DNA sequences of a particular organism are what they are. They are known precisely. Or, more properly, the sequences of the contigs that are assembled to create the sequence are known precisely, while there may be dispute about the proper assembly. Such data will be of value indefinitely – and for example to the extent that we wonder if environmental changes are changing the population genetics of various organisms, data on the frequency of particular genetic variations in populations will be of value indefinitely. Similarly, video and audio of an American folk musician, a speaker of an endangered language or a ballet performance will be of value indefinitely although argument might well go on regarding the interpretation and annotation of that video and audio. Such images and associated audio can never be recreated, and are thus of use indefinitely

Pneumococcal Induced T-activation with Resultant Thrombotic Microangiopathy

Thrombotic microangiopathies are disorders resulting from platelet thromboses forming in the microvasculature with resultant schistocyte forms. Hemolytic uremic syndrome (HUS) is a microangiopathic hemolytic anemia often complicated by acute renal failure in children. HUS is typically caused by bacterial infection, most commonly enterohemorrhagic Escherichia coli. Neuraminidase-producing organisms, such as Streptococcus pneumoniae have also been reported as potential etiologies. The pathogenesis in these cases involves cleavage of sialic acid residues from the surfaces of erythrocytes, platelets, and glomerular capillary endothelial cells, exposing the Thomsen-Friedenreich antigen, a process known as T-activation. We describe a 2-year-old girl who presented with pneumococcal pneumonia and sepsis ultimately resulting in a thrombotic microangiopathy with acute renal failure, most consistent with HUS. The patient’s direct antiglobulin test was positive. Polyagglutination was observed with human adult serum, but not with umbilical cord serum. Her red blood cells (RBCs) were reactive against peanut and soybean lectins, but not Salvia sclarea or Salvia horminum lectins. These findings are consistent with T-activation. Clinicians should be cognizant of the possibility of T-activation with resultant HUS in patients infected with neuraminidase-producing bacteria. Such patients may be difficult to identify using monoclonal typing antisera, as these typically do not have anti-T antibodies. Whether such patients are at risk for transfusion-associated hemolysis is debatable

Nonrandom Territory Occupancy by Nesting Gyrfalcons (\u3ci\u3eFalco rusticolus\u3c/i\u3e)

We know little regarding how specific aspects of habitat influence spatial variation in site occupancy by Arctic wildlife, yet this information is fundamental to effective conservation. To address this information gap, we assessed occupancy of 84 Gyrfalcon (Falco rusticolus Linnaeus, 1758) breeding territories observed annually between 2004 and 2013 in western Alaska. In line with the theory of population regulation by site dependence, we asked whether Gyrfalcons exhibited a nonrandom pattern of site selection and if heterogeneous landscape attributes correlated with observed occupancy patterns. We characterized high- and low-occupancy breeding territories as those occupied more or less often than expected by chance, and we evaluated land cover at 1 and 15 km circles centered around nesting territories to identify habitat variables associated with observed occupancy patterns. We tested 15 competing models to rank hypotheses reflecting prey and habitat variables important to nesting Gyrfalcons. We confirmed a nonrandom pattern of site selection but found only weak evidence that the distribution of prey habitat was responsible for this pattern. We reason that preferential habitat use by nesting Gyrfalcons may be determined by spatial scales other than those we measured or may be driven by landscape-level attributes at time periods other than during the brood rearing period

Thermodynamics of non-local materials: extra fluxes and internal powers

The most usual formulation of the Laws of Thermodynamics turns out to be suitable for local or simple materials, while for non-local systems there are two different ways: either modify this usual formulation by introducing suitable extra fluxes or express the Laws of Thermodynamics in terms of internal powers directly, as we propose in this paper. The first choice is subject to the criticism that the vector fluxes must be introduced a posteriori in order to obtain the compatibility with the Laws of Thermodynamics. On the contrary, the formulation in terms of internal powers is more general, because it is a priori defined on the basis of the constitutive equations. Besides it allows to highlight, without ambiguity, the contribution of the internal powers in the variation of the thermodynamic potentials. Finally, in this paper, we consider some examples of non-local materials and derive the proper expressions of their internal powers from the power balance laws.Comment: 16 pages, in press on Continuum Mechanics and Thermodynamic

Direct sampling of exponential phase moments of smoothed Wigner functions

We investigate exponential phase moments of the s-parametrized quasidistributions (smoothed Wigner functions). We show that the knowledge of these moments as functions of s provides, together with photon-number statistics, a complete description of the quantum state. We demonstrate that the exponential phase moments can be directly sampled from the data recorded in balanced homodyne detection and we present simple expressions for the sampling kernels. The phase moments are Fourier coefficients of phase distributions obtained from the quasidistributions via integration over the radial variable in polar coordinates. We performed Monte Carlo simulations of the homodyne detection and we demonstrate the feasibility of direct sampling of the moments and subsequent reconstruction of the phase distribution.Comment: RevTeX, 8 pages, 6 figures, accepted Phys. Rev.

Stimulant Medication and Reading Performance

The study examined the sustained effects of methylphenidate on reading performance in a sample of 42 boys, ages 8 to 11, with attention deficit-hyperactivity disorder (ADHD). Two subgroups were formed based on the presence or absence of co-occurring conduct disorders. Subjects were selected on the basis of their positive response to methylphenidate as determined in a series of original medication trials (Forness, Cantwell, Swanson, Hanna, & Youpa, 1991). For the purpose of this study, subjects were placed on their optimal dose of medication for a 6-week period and then tested on measures of oral reading and reading comprehension equivalent to those used in the original trials, retested after a week without medication (placebo), then tested again the following week after return to medication. Only the subgroup with conduct disorders responded, and this response was limited to reading comprehension improvement in only those subjects who also demonstrated improvement in oral reading on original trials. No response differences were found between subjects with or without learning disabilities.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/68569/2/10.1177_002221949202500205.pd

Solar Intranetwork Magnetic Elements: bipolar flux appearance

The current study aims to quantify characteristic features of bipolar flux appearance of solar intranetwork (IN) magnetic elements. To attack such a problem, we use the Narrow-band Filter Imager (NFI) magnetograms from the Solar Optical Telescope (SOT) on board \emph{Hinode}; these data are from quiet and an enhanced network areas. Cluster emergence of mixed polarities and IN ephemeral regions (ERs) are the most conspicuous forms of bipolar flux appearance within the network. Each of the clusters is characterized by a few well-developed ERs that are partially or fully co-aligned in magnetic axis orientation. On average, the sampled IN ERs have total maximum unsigned flux of several 10^{17} Mx, separation of 3-4 arcsec, and a lifetime of 10-15 minutes. The smallest IN ERs have a maximum unsigned flux of several 10^{16} Mx, separations less than 1 arcsec, and lifetimes as short as 5 minutes. Most IN ERs exhibit a rotation of their magnetic axis of more than 10 degrees during flux emergence. Peculiar flux appearance, e.g., bipole shrinkage followed by growth or the reverse, is not unusual. A few examples show repeated shrinkage-growth or growth-shrinkage, like magnetic floats in the dynamic photosphere. The observed bipolar behavior seems to carry rich information on magneto-convection in the sub-photospheric layer.Comment: 26 pages, 14 figure

Experimental Study of the Shortest Reset Word of Random Automata

In this paper we describe an approach to finding the shortest reset word of a finite synchronizing automaton by using a SAT solver. We use this approach to perform an experimental study of the length of the shortest reset word of a finite synchronizing automaton. The largest automata we considered had 100 states. The results of the experiments allow us to formulate a hypothesis that the length of the shortest reset word of a random finite automaton with $n$ states and 2 input letters with high probability is sublinear with respect to $n$ and can be estimated as $1.95 n^{0.55}.

Two-proton correlations from 158 AGeV Pb+Pb central collisions

The two-proton correlation function at midrapidity from Pb+Pb central collisions at 158 AGeV has been measured by the NA49 experiment. The results are compared to model predictions from static thermal Gaussian proton source distributions and transport models RQMD and VENUS. An effective proton source size is determined by minimizing CHI-square/ndf between the correlation functions of the data and those calculated for the Gaussian sources, yielding 3.85 +-0.15(stat.) +0.60-0.25(syst.) fm. Both the RQMD and the VENUS model are consistent with the data within the error in the correlation peak region.Comment: RevTeX style, 6 pages, 4 figures, 1 table. More discussion are added about the structure on the tail of the correlation function. The systematic error is revised. To appear in Phys. Lett.

Event-by-event fluctuations of average transverse momentum in central Pb+Pb collisions at 158 GeV per nucleon

We present first data on event-by-event fluctuations in the average transverse momentum of charged particles produced in Pb+Pb collisions at the CERN SPS. This measurement provides previously unavailable information allowing sensitive tests of microscopic and thermodynamic collision models and to search for fluctuations expected to occur in the vicinity of the predicted QCD phase transition. We find that the observed variance of the event-by-event average transverse momentum is consistent with independent particle production modified by the known two-particle correlations due to quantum statistics and final state interactions and folded with the resolution of the NA49 apparatus. For two specific models of non-statistical fluctuations in transverse momentum limits are derived in terms of fluctuation amplitude. We show that a significant part of the parameter space for a model of isospin fluctuations predicted as a consequence of chiral symmetry restoration in a non-equilibrium scenario is excluded by our measurement.Comment: 6 pages, 2 figures, submitted to Phys. Lett.