Baited underwater camera studies of the biodiversity and abundance of animals in the temperate, tropical and Antarctic marine environment

Baited underwater camera (BUC) systems are becoming popular in the shallow water environment to monitor the relative diversity and abundance of fish and invertebrate assemblages. This thesis describes methods developed to use BUCs in temperate, tropical and Antarctic environments and their application to questions concerning the factors controlling shallow water marine biodiversity and abundance. In Chapter 2 the design and development of a BUC system suitable for attracting, identifying and counting temperate shallow water (< 30 m) fish and crustacean species on the West coast of Scotland is described. The use of BUC systems has been limited in temperate waters and a cost- and – time efficient method could be valuable to monitor the before and after impact of the proposed Scottish Marine Protected Area network. As a test of the BUC, deployments were made in Lamlash Bay no-take zone (NTZ) and in two control open sites to provide baseline data early in the life of the NTZ against which future BUC studies can be compared. The tropical Gulf of Aqaba supports unique coral reef fish assemblages and it is important to perform a study specific in this distinct biogeographical region to understand whether BUC surveys could be useful in this sensitive environment. In Chapter 3 we therefore compared the predatory fish assemblages recorded in BUC deployments to the established method of Underwater Visual Census (UVC) surveys in the northern Gulf of Aqaba. Abundance metrics from the arrival pattern of fish at the BUC did not correlate with population abundance estimates from UVCs and it was concluded that until improved methods of interpreting BUC data are developed the deployment of BUCs could be used to assess predator species richness but is not able to indicate relative variation in population abundance. Chapter 4 demonstrates how BUC systems can be used to gather data on a complicated ecological question in extreme conditions. A BUC system was used to examine the distribution of scavenging fauna in relation to the spatial variation in exposure to iceberg impacts experienced at difference iceberg scouring conditions and depths within Marguerite Bay. The results indicate that different scavenger species are adapted to high and low iceberg scouring environments and that they are distributed in accordance with the recognised pattern of decreasing iceberg scouring frequency with depth. The above studies used relative measures of abundance such as recording the highest number of individuals observed at a single time (MaxN). Such measures are limited in their usefulness but there are no robust means of estimating absolute abundance, especially for complex shallow water systems. In Chapter 5 a modelling approach, using a stochastic simulation, was developed and used to estimate population abundance for species commonly observed in the above studies. Model abundance estimates were generally found to be comparable to those from corresponding UVC transects. This modelling approach has the potential to substantially improve the ability of BUC systems around the world to assess fish and invertebrate diversity and abundance

Terrestrial and semi-aquatic scavengers on invasive Pacific pink salmon (Oncorhynchus gorbuscha) carcasses in a riparian ecosystem in northern Norway

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Epifaunal habitat associations on mixed and hard bottom substrates in coastal waters of Northern Norway

Hard and mixed seafloor substrates are an important benthic habitat in coastal northern Norway and they are known to be colonized by relatively diverse communities of sessile epifauna. These assemblages are highly susceptible to physical damage and stresses imposed by organic material from industrial and municipal sources. However, despite increasing prevalence of stressors, the diversity and distribution of benthic substrates and biological communities in coastal Arctic and sub-Arctic regions remain poorly documented. In response, this study has characterized the composition of mixed and hard bottom substrates and associated sessile epifauna in fjords in Finnmark, northern Norway, using remote sensing and an innovation low-cost towed camera method. The study fjords supported a dense covering (0.1 to 0.68 individuals m–2) of sponge taxa common to deep-water ostur sponge habitats (Geodia sp., Mycale lingua, Polymastia sp., Phakellia ventilabrum, and Axinella infundibuliformis). In addition, aggregations of the soft coral (Duva florida), the tunicate (Ascidia sp.), the seastar (Ceramaster granularis) and anemone (Hormathia digitata) were prominent fauna. The small-scale spatial patterns of the epifaunal communities in this study were primarily influenced by the local hydrodynamic regime, depth, the topographical slope and the presence of hard bedrock substrates. This description of the composition, distribution and the identification of environmental drivers of epibenthic communities is valuable for the development of predictive habitat models to manage the benthic impact of multiple stressor on these ecological valuable and vulnerable Arctic habitats.publishedVersio

Spatial response of hard- and mixed-bottom benthic epifauna to organic enrichment from salmon aquaculture in northern Norway

Norwegian Atlantic salmon aquaculture is continuing to expand in northern regions dominated by hard- and mixed-bottom substrates. Such habitats contain rich benthic epifaunal communities, including sponges and other sessile invertebrates susceptible to the impacts of particulate material released from finfish farms. Here, conventional soft-sediment sampling techniques are unable to discern the impacts of farm waste, and new monitoring methods and indicator taxa must be identified. This study improves understanding of the impacts of particulate waste released from salmon farms on the density and structure of benthic epifaunal communities on mixed- and hard-bottom substrates. The diversity, density, and composition of epifaunal communities and visually conspicuous benthic infauna were recorded in towed camera transects along the enrichment gradient (~50-800 m) of 3 salmon farms in northern Norway. Elevated fluxes of particulate material in the vicinity of all farms significantly affected epifaunal community composition, as did the coverage of some key substrate types. The defecated mounds of lugworms and the seastar Asterias rubens were notably more abundant near the farms where fluxes were elevated. The sponges Polymastia spp. and Phakellia spp. and the soft coral Duva florida showed significant declines in density with increasing sedimentation and were principal taxa in communities at natural sedimentation levels. Results identify taxa with both positive and negative spatial associations to particulate waste released from finfish farms and the potential for the development of an epifauna indicator-based index for monitoring the environmental impacts of aquaculture in hard- and mixed-bottom dominated substrates.publishedVersio

Ecological insights into abyssal bentho-pelagic fish at 4000 m depth using a multi-beam echosounder on a remotely operated vehicle

Ecological and behavioral data on mobile, low density, benthopelagic animals is difficult to collect in the abyssal environment. However, these species occupy an important position in the abyssal food chain. At-depth ROV-mounted echosounder studies provide a powerful tool to gather in-situ information on abyssal benthopelagic assemblages and discern their distribution, behavior and habitat associations. This study presents a new perspective on mobile benthopelagic assemblages at the long-term study site, Station M (∼4000 m), using a Seabat T20-S MBES mounted on the ROV Doc Ricketts. The targets (∼45 m off the seafloor) are believed to be the abyssal grenadier of the species Coryphaenoides armatus or C. yaquinae, species known to dominate the mobile benthopelagic fauna at Station M. The swimming behavior of the targets indicated little evidence of avoidance or attraction to the slowly moving ROV and demonstrates the effectiveness of this platform to collect data on benthopelagic fish. The information on targets in close (<1 m) association with the seafloor from the MBES corresponded well to target densities recorded by the video transects. However, in addition the MBES resolved the distribution of targets up to 45 m above the seafloor. Target density had a small peak close to the seafloor (<1 m) but increased in density with height above the seafloor, exceeding the maximum near-bottom density by ∼50 times. ROV-mounted MBES surveys can effectively provide data on the distribution and behavior of benthopelagic fish and further understanding of the pelagic-benthic links in the abyssal deep-sea.acceptedVersio

Evidence of energy and nutrient transfer from invasive pink salmon (Oncorhynchus gorbuscha) spawners to juvenile Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) in northern Norway

Recent large influxes of non-native Pacific pink salmon (Oncorhynchus gorbuscha) to North European rivers have raised concern over their potential negative impacts on native salmonids and recipient ecosystems. The eggs and carcasses of semelparous pink salmon may provide a significant nutrient and energy subsidy to native biota, but this phenomenon has not been widely documented outside the species' native distribution. We analysed the stomach contents and stable isotope values (δ15N and δ13C) in muscle and liver tissues of juvenile Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) to determine whether these native salmonids utilise marine-derived nutrients and energy provided by pink salmon eggs and carcasses in the subarctic river system Vesterelva, northern Norway. Although egg foraging and assimilation of marine-derived nutrients in fish body tissues were found to be minor at the population level, a few juvenile salmon and trout had recently eaten large quantities of pink salmon eggs. Some of these individuals also had high δ15N and δ13C values, indicating a long-term diet subsidised by marine-derived nutrients and energy from pink salmon eggs. Hence, our study provides novel evidence that the eggs of invasive pink salmon may provide an energetic, profitable food resource for juvenile native fish. More research is needed to understand the broader ecological implications for fishes and other biota in river ecosystems invaded by pink salmon. egg predation, marine-derived nutrients, non-native salmonids, resource subsidy, stable isotope analysis, subarctic riverpublishedVersio

Habitat associations of juvenile Atlantic cod (Gadus morhua L.) and sympatric demersal fish communities within shallow inshore nursery grounds

Resolving the relationship between demersal fish and sublittoral biotic habitats and substrates is a key element in the protection of important nursery grounds for strengthening fish recruitment. In Norway, coastal Atlantic cod (Gadus morhua L.) is a commercially and culturally important demersal fish for Norwegian coastal communities, and in recent decades the stock has declined to such an extent that a plan to rebuild the stock to biologically safe limits has been implemented. Yet, little is known about the specific biotic and abiotic habitat associations of the early-life stages of coastal cod, which is important for the management and protection of the species. The same shallow, sublittoral zones are inhabited by juveniles and adults of other commercial demersal gadoids and wrasses. This study presents novel findings on associations between juvenile coastal cod and other demersal fish species with seafloor substrates and biological habitats, inferred from five years of extensive fyke net surveys. Newly settled 0-group cod were typically associated with eel grass and red algae biotic habitats on sand and shell sand substrates. However, there was an ontogenic habitat shift amongst one year old (1-group) individuals that became more ubiquitous with their biotic habitat or substrate type choices. The juvenile gadoids saithe (Pollachius virens) and pollack (Pollachius pollachius), were most associated with hard bottom dominated sites with saithe being more abundant at exposed sites, compared to pollack. Goldsinny wrasse (Ctenolabrus rupestris) and corkwing wrasse (Symphodus melops) appeared to favor sugar kelp forests and red algae. Overall, the study identifies the specific sublittoral biotic habitats and substrates important to different early life stages of juvenile coastal cod and other commercially important demersal fish, providing critical information needed for identifying candidate coastal habitats for protection.publishedVersio

Habitat associations of juvenile Atlantic cod (Gadus morhua L.) and sympatric demersal fish communities within shallow inshore nursery grounds

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Attraction of cod Gadus morhua from coastal spawning grounds to salmon farms

Wild fish aggregate at aquaculture net-pens, but the underlying mechanisms are not fully understood. This study examined how salmon farms attract coastal Atlantic cod Gadus morhua from their inshore spawning grounds. Acoustic receivers were deployed at 5 known cod spawning grounds and 6 salmon Salmo salar farms located at varying distances from these grounds in a mid-Norway study site. Cod were caught at each spawning ground annually from 2017-2019, fitted with acoustic transmitters and released (n = 535). A total of 289 tagged cod (54%) were detected at the salmon farms, with more cod detected at farms closest to the focal spawning grounds and at operational farms. The latter result is likely linked to the availability of feeding opportunities at farm locations. Those cod that were detected by the receivers spent less time at farms farther from their release locations. For the farm-associated cod, 70% were detected for 1 mo close to the farms, with 1 individual staying 720 d underneath the farm. A total of 135 cod visited 2 or more farms, with farms in proximity more connected in terms of inter-farm movement. Some of the cod utilizing these local spawning grounds likely have considerable dietary input from salmon feed.publishedVersio

Attraction of cod Gadus morhua from coastal spawning grounds to salmon farms

Wild fish aggregate at aquaculture net-pens, but the underlying mechanisms are not fully understood. This study examined how salmon farms attract coastal Atlantic cod Gadus morhua from their inshore spawning grounds. Acoustic receivers were deployed at 5 known cod spawning grounds and 6 salmon Salmo salar farms located at varying distances from these grounds in a mid-Norway study site. Cod were caught at each spawning ground annually from 2017-2019, fitted with acoustic transmitters and released (n = 535). A total of 289 tagged cod (54%) were detected at the salmon farms, with more cod detected at farms closest to the focal spawning grounds and at operational farms. The latter result is likely linked to the availability of feeding opportunities at farm locations. Those cod that were detected by the receivers spent less time at farms farther from their release locations. For the farm-associated cod, 70% were detected for 1 mo close to the farms, with 1 individual staying 720 d underneath the farm. A total of 135 cod visited 2 or more farms, with farms in proximity more connected in terms of inter-farm movement. Some of the cod utilizing these local spawning grounds likely have considerable dietary input from salmon feed.publishedVersionpublishedVersio