Coherent Flaw Reflectivity Estimation in Nonstationary Noise

This paper presents a model for RF broadband ultrasonic A-scans obtained from materials composed of microstructures, in which isolated flaws or impurities may exist. The model incorporates both the RF phase and magnitude differences between the microstructure and coherent flaw echo spectra. An adaptive implementation of the maximum-likelihood estimator (MLE) is presented for estimating A-scan amplitudes associated with coherent scatterers embedded in grain echoes. The adaptive implementation is motivated by the nonstationary behavior of the back-scattered energy received over the duration of the A-scan [1]. This nonstationarity results from the frequency dependent absorption, scattering, and diffraction that occurs as the pulse propagates through the materia

Quantum-limited time-frequency estimation through mode-selective photon measurement

By projecting onto complex optical mode profiles, it is possible to estimate arbitrarily small separations between objects with quantum-limited precision, free of uncertainty arising from overlapping intensity profiles. Here we extend these techniques to the time-frequency domain using mode-selective sum-frequency generation with shaped ultrafast pulses. We experimentally resolve temporal and spectral separations between incoherent mixtures of single-photon level signals ten times smaller than their optical bandwidths with a ten-fold improvement in precision over the intensity-only Cram\'er-Rao bound.Comment: Six pages, three figures. Comments welcome

Rapidly evolving protointrons in Saccharomyces genomes revealed by a hungry spliceosome.

Introns are a prevalent feature of eukaryotic genomes, yet their origins and contributions to genome function and evolution remain mysterious. In budding yeast, repression of the highly transcribed intron-containing ribosomal protein genes (RPGs) globally increases splicing of non-RPG transcripts through reduced competition for the spliceosome. We show that under these "hungry spliceosome" conditions, splicing occurs at more than 150 previously unannotated locations we call protointrons that do not overlap known introns. Protointrons use a less constrained set of splice sites and branchpoints than standard introns, including in one case AT-AC in place of GT-AG. Protointrons are not conserved in all closely related species, suggesting that most are not under positive selection and are fated to disappear. Some are found in non-coding RNAs (e. g. CUTs and SUTs), where they may contribute to the creation of new genes. Others are found across boundaries between noncoding and coding sequences, or within coding sequences, where they offer pathways to the creation of new protein variants, or new regulatory controls for existing genes. We define protointrons as (1) nonconserved intron-like sequences that are (2) infrequently spliced, and importantly (3) are not currently understood to contribute to gene expression or regulation in the way that standard introns function. A very few protointrons in S. cerevisiae challenge this classification by their increased splicing frequency and potential function, consistent with the proposed evolutionary process of "intronization", whereby new standard introns are created. This snapshot of intron evolution highlights the important role of the spliceosome in the expansion of transcribed genomic sequence space, providing a pathway for the rare events that may lead to the birth of new eukaryotic genes and the refinement of existing gene function