Resistance to metal contamination by historically-stressed populations of Ceriodaphnia pulchella: Environmental influence versus genetic determination

Field populations of daphnids historically-stressed by metal contamination may show increased resistance to those contaminants. This study was undertaken aiming to confirm/infirm three main hypotheses: (1) field populations living in historically-impacted environments are more tolerant to metal stress than populations from reference sites; (2) resistance differences are genetically-determined, i.e., differences persist after controlling for environmental and maternal effects, by acclimating cloned lineages to similar conditions; and (3) resistance to stress in field populations living in historically-impacted environments is due to the disappearance of sensitive individuals rather than the appearance of highly resistant ones, i.e., the shift in the central tendency of resistance is linked to a decrease in the range of population resistance and not to an increased upper limit of the population resistance. Three populations of the cladoceran Ceriodaphnia pulchella Sars in Southern Portugal were sampled; one of which has been historically-stressed by acid mine drainage (AMD) from an abandoned cupric-pyrite mine and two from reference sites within the same watershed. To assess if resistance differences were genetically-determined, the three populations were acclimated for at least five generations under the same controlled conditions. Assays with AMD contaminated water samples were performed with both non-acclimated and acclimated individuals from all studied populations. Reproduction results in sub-lethal assays revealed significant differences between the reference and stressed populations. Significant differences in resistance to lethal levels of toxicity were observed for both non-acclimated and acclimated populations, individuals from population I being more resistant than those from reference populations. The existence of genetically-determined sensitivity differences was attested by the presence of significant differences in resistance to lethal levels of toxicity in acclimated individuals from reference and stressed populations. Results from cumulative mortality assays revealed that sensitive individuals were most probably present in the original population, but no conclusion could be draw about the presence of extreme resistant individuals in the historically-stressed population. Finally, it was shown that responses among populations converged from high to low levels of contamination.http://www.sciencedirect.com/science/article/B6V74-4G05M6B-5/1/1296fbdbc8b8e0e8820be6136216200

Inhibition of RNA polymerase II transcription in human cells by synthetic DNA-binding ligands

Sequence-specific DNA-binding small molecules that can permeate human cells potentially could regulate transcription of specific genes. Multiple cellular DNA-binding transcription factors are required by HIV type 1 for RNA synthesis. Two pyrrole-imidazole polyamides were designed to bind DNA sequences immediately adjacent to binding sites for the transcription factors Ets-l, lymphoid-enhancer binding factor 1, and TATA-box binding protein. These synthetic ligands specifically inhibit DNA-binding of each transcription factor and HIV type 1 transcription in cell-free assays. When used in combination, the polyamides inhibit virus replication by >99% in isolated human peripheral blood lymphocytes, with no detectable cell toxicity, The ability of small molecules to target predetermined DNA sequences located within RNA polymerase II promoters suggests a general approach for regulation of gene expression, as well as a mechanism for the inhibition of viral replication

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

Timely and accurate biodiversity analysis poses an ongoing challenge for the success of biomonitoring programs. Morphology-based identification of bioindicator taxa is time consuming, and rarely supports species-level resolution especially for immature life stages. Much work has been done in the past decade to develop alternative approaches for biodiversity analysis using DNA sequence-based approaches such as molecular phylogenetics and DNA barcoding. On-going assembly of DNA barcode reference libraries will provide the basis for a DNA-based identification system. The use of recently introduced next-generation sequencing (NGS) approaches in biodiversity science has the potential to further extend the application of DNA information for routine biomonitoring applications to an unprecedented scale. Here we demonstrate the feasibility of using 454 massively parallel pyrosequencing for species-level analysis of freshwater benthic macroinvertebrate taxa commonly used for biomonitoring. We designed our experiments in order to directly compare morphology-based, Sanger sequencing DNA barcoding, and next-generation environmental barcoding approaches. Our results show the ability of 454 pyrosequencing of mini-barcodes to accurately identify all species with more than 1% abundance in the pooled mixture. Although the approach failed to identify 6 rare species in the mixture, the presence of sequences from 9 species that were not represented by individuals in the mixture provides evidence that DNA based analysis may yet provide a valuable approach in finding rare species in bulk environmental samples. We further demonstrate the application of the environmental barcoding approach by comparing benthic macroinvertebrates from an urban region to those obtained from a conservation area. Although considerable effort will be required to robustly optimize NGS tools to identify species from bulk environmental samples, our results indicate the potential of an environmental barcoding approach for biomonitoring programs

Vulnerability of diatom communities in the Peace–Athabasca Delta to environmental change

Habitat degradation associated with resource development is a major ecological concern, particularly in Canada’s boreal zone where limited information on biodiversity is available. Habitat degradation can lead to reductions in biodiversity and ecosystem function, especially when drivers of variability and diversity patterns have not been identified for a region of interest. In this study, the distribution of diatom genera in the Peace–Athabasca Delta in northeastern Alberta was examined in relation to seasonal, geographic, and alkalinity gradients. Grab samples of six abiotic variables (total dissolved nitrogen, total dissolved phosphorus, dissolved iron, turbidity, pH, and specific conductance (SPC)) were taken from 12 remote wetlands over three sampling periods, and regressed against an ordination of diatom community composition to identify key environmental drivers of diatom community variation. Indirect gradient analysis identified two major gradients among sites. First, separation of sites among sampling periods showed successional seasonal changes in diatom community composition. Second, separation of sites from the Peace sub-delta and Birch sub-delta showed a gradient of geographic separation. Direct gradient analysis failed to explain the underlying drivers of these two gradients, but did show that alkalinity is a key driver of diatom community composition in the Embarras sub-delta, and that these sites could be particularly vulnerable to community changes associated with acidification

Licensing an assured isolation facility for low-level radioactive waste. Volume 2: Recommendations on the content and review of an application

This report provides a detailed set of proposed criteria and guidance for the preparation of a license application for an assured isolation facility (AIF). The report is intended to provide a detailed planning basis upon which a prospective applicant may begin pre-licensing discussions with the Nuclear Regulatory Commission and initiate development of a license application. The report may also be useful to the NRC or to state regulatory agencies that may be asked to review such an application. Volume 1 of this report provides background information, and describes the licensing approach and methodology. Volume 2 identifies specific information that is recommended for inclusion in a license application

Licensing an assured isolation facility for low-level radioactive waste. Volume 1: Licensing strategy and issues

This report provides a detailed set of proposed criteria and guidance for the preparation of a license application for an assured isolation facility (AIF). The report is intended to provide a detailed planning basis upon which a prospective applicant may begin pre-licensing discussions with the Nuclear Regulatory Commission and initiate development of a license application. The report may also be useful to the NRC or to state regulatory agencies that may be asked to review such an application. Volume 1 of this report provides background information, and describes the licensing approach and methodology. Volume 2 identifies specific information that is recommended for inclusion in a license application

Feeding behaviour of the prawn Macrobrachium rosenbergii as an indicator of pesticide contamination in tropical freshwater

The purpose of this research was to develop and standardize a novel feeding bioassay with Macrobrachium rosenbergii for use in the laboratory and allowing it to be easily deployed under field conditions. Standardization of the test aimed to minimize feeding rate variations and to ensure that subsequent statistical analyses have sufficient power to consistently detect changes in feeding rates. These were accomplished through the development of a post-exposure feeding toxicity test under laboratory, microcosm and in situ/field conditions. This procedure was proven to be repeatable and economical. M. rosenbergii as test animals were available in terms of quantity and uniformity in sizes. The standard guidelines and procedures for M. rosenbergii bioassay developed from this study include the size of test animals (9-10 mm), density in exposure containers (10 animals in 500 mL of medium in the laboratory, 10 animals in field chambers with 98.6 mL volume), exposure time (24 hours), feeding period for post-exposure feeding (4 hours) and number of replicates for the feeding test (10 replicates for individual measurements). The tiered approach used in the preliminary risk assessment of pesticide using TOXSWA was capable of screening the risk level of pesticide in the study area, identifying profenofos and dimethoate as test chemicals for the lethal and sub-lethal experiments. This model was beneficial in the preliminary risk assessment of pesticides in the tropics, since it was not necessary to set up laboratory work. This method could also provide preliminary data to support the environmental planner and decision/policy maker. This is an alternative way to develop a cost efficient model to inform and warn the risk of pesticide use. The effects of pH, temperature and hardness on control post-exposure feeding rates of M. rosenbergii were assessed and indicated that M. rosenbergii was very sensitive to acidic and basic conditions. The use of post-exposure feeding inhibition as the endpoint under laboratory conditions revealed that prawns were sensitive to pesticides (chlorpyrifos, dimethoate and profenofos) and a heavy metal (zinc). Post-exposure feeding rate inhibition could be used as a sublethal endpoint as the EC50 values obtained for chlorpyrifos and zinc were lower than their lethal levels. Mortality of prawn was also another endpoint used to define the toxicity of pesticides such as carbendazim, in which mortality occurred during exposure, but post-exposure feeding rate of the surviving animals did not decrease. The microcosm experiments were able to link the laboratory toxicity tests and the effects observed in the field. Microcosm studies provided another dimension to studies looking at pesticide effects on aquatic systems. In this research, carbendazim affected feeding and survival rates in the microcosm set-up but in the laboratory only mortality showed a significant difference (P < 0.05). In situ bioassays were able to show the effects of pesticides on post-exposure feeding rates using the methods developed. Post-exposure feeding rates were significantly lower than control in farms using pesticides while in uncontaminated sites (pesticide-free), the post-exposure feeding rates did not decrease. However, mortality was observed even in the uncontaminated sites which could be attributed to other factors such as low dissolved oxygen and presence of some other unidentified chemical substances. The degree of mortality and the effect on feeding rates depends not only on the type and concentration of the known pesticide but also on water quality parameters. The basic methods developed for in situ bioassay from this research is a simple, easy and fast way to determine the effect of pesticides because the results can be seen in the field. The procedures developed and results obtained from this study can be used as a basis for further toxicity studies on M. rosenbergii and other potential tropical species.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

BMQ

BMQ: Boston Medical Quarterly was published from 1950-1966 by the Boston University School of Medicine and the Massachusetts Memorial Hospitals

Environmental filtering of macroinvertebrate traits influences ecosystem functioning in a large river floodplain

Article describes how the biodiversity–ecosystem function hypothesis postulates that higher biodiversity is correlated with faster ecosystem process rates and increased ecosystem stability in fluctuating environments. The authors examined linkages among floodplain wetland habitats, invertebrate communities and their associated traits, and ecosystem function across 60 sites within the floodplain wetlands of the lower Wolastoq, Saint John River, New Brunswick

FORUM: Ecological networks: the missing links in biomonitoring science.

Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current biomonitoring approaches lack the tools required to deal with the effects of stressors on species and their interactions in complex natural systems.Ecological networks (trophic or mutualistic) can offer new insights into ecosystem degradation, adding value to current taxonomically constrained schemes. We highlight some examples to show how new network approaches can be used to interpret ecological responses.Synthesis and applications. Augmenting routine biomonitoring data with interaction data derived from the literature, complemented with ground-truthed data from direct observations where feasible, allows us to begin to characterise large numbers of ecological networks across environmental gradients. This process can be accelerated by adopting emerging technologies and novel analytical approaches, enabling biomonitoring to move beyond simple pass/fail schemes and to address the many ecological responses that can only be understood from a network-based perspective