Agronomic performance of durum wheat landraces and modern cultivars and its association with genotypic variation in vernalization response (Vrn-1) and photoperiod sensitivity (Ppd-1) genes

This study analyzed the relationship between important agronomic traits and major genes regulating flowering time in a panel of 151 Mediterranean durum wheat landraces and 20 modern cultivars. Field experiments were conducted under rainfed conditions during six crop seasons in northeastern Spain. Multivariate analysis of agronomic traits and genotypic data allowed the modern cultivars to be differentiated from the landraces and germplasm pools to be identified within the landraces associated with their geographic origin. The high frequency of the Vrn-A1c allele and the photoperiod insensitive alleles GS105 and GS100 at Ppd-A1 reduced time to anthesis and enlarged the grain filling period of the modern cultivars compared with the landraces. Ancient durums collected close to the domestication area of wheat showed a high frequency of the winter allele vrn-B1 and the photoperiod sensitivity allele Ppd-B1b. None of the allele variants or allelic combinations accounted significantly for variations in any agronomic trait of modern cultivars. Vernalization and photoperiod genes acted additively in explaining the genotypic variance for the agronomic traits of the landraces. Vrn-A1 alleles and Vrn-A1+Vrn-B1 allelic combinations significantly affected the number of grains per spike (NGS), thousand kernel weight (TKW) and grain filling rate (R), accounting for 9%–12% of the genotypic variance for these traits. Ppd-1 accounted for 6%–21% of the genotypic variance for R, grain filling duration (GFD), plant height (PH), biomass at anthesis (CDW) and harvest index (HI). Vrn-1+Ppd-1 allelic combinations accounted for 21%–26% of the genotypic variance for these traits. Except for NGS, the effect of vernalization and photoperiod genes on the agronomic traits was linked to their effect on anthesis time. The three-day delay in anthesis time caused by the allele Vrn-A1d irrespective of the allele Vrn-A1c resulted in increases of 10 % in R and 7% in TKW. The eight-day delay in anthesis time caused by the allele Ppd-A1(DelCD) compared with Ppd-A1(GS105) increased R by 19 % and PH by 28 %, but reduced GFD and HI by 10 %. None of the allele variants or allelic combinations at the Vrn-1 or Ppd-1 genes accounted significantly for variations in yield or number of spikes m−2 (NSm2).info:eu-repo/semantics/publishedVersio

Agronomic, Physiological and Genetic Changes Associated With Evolution, Migration and Modern Breeding in Durum Wheat

A panel of 172 Mediterranean durum wheat landraces and 200 modern cultivars was phenotyped during three years for 21 agronomic and physiological traits and genotyped with 46,161 DArTseq markers. Modern cultivars showed greater yield, number of grains per spike (NGS) and harvest index (HI), but similar number of spikes per unit area (NS) and grain weight than the landraces. Modern cultivars had earlier heading but longer heading-anthesis and grain-filling periods than the landraces. They had greater RUE (Radiation Use Efficiency) up to anthesis and lower canopy temperature at anthesis than the landraces, but the opposite was true during the grain-filling period. Landraces produced more biomass at both anthesis and maturity. The 120 genotypes with a membership coefficient q > 0.8 to the five genetic subpopulations (SP) that structured the panel were related with the geographic distribution and evolutionary history of durum wheat. SP1 included landraces from eastern countries, the domestication region of the “Fertile Crescent.” SP2 and SP3 consisted of landraces from the north and the south Mediterranean shores, where durum wheat spread during its migration westward. Decreases in NS, grain-filling duration and HI, but increases in early soil coverage, days to heading, biomass at anthesis, grain-filling rate, plant height and peduncle length occurred during this migration. SP4 grouped modern cultivars gathering the CIMMYT/ICARDA genetic background, and SP5 contained modern north-American cultivars. SP4 was agronomically distant from the landraces, but SP5 was genetically and agronomically close to SP1. GWAS identified 2,046 marker-trait associations (MTA) and 144 QTL hotspots integrating 1,927 MTAs. Thirty-nine haplotype blocks (HB) with allelic differences among SPs and associated with 16 agronomic traits were identified within 13 QTL hotspots. Alleles in chromosomes 5A and 7A detected in landraces were associated with decreased yield. The late heading and short grain-filling period of SP2 and SP3 were associated with a hotspot on chromosome 7B. The heavy grains of SP3 were associated with hotspots on chromosomes 2A and 7A. The greater NGS and HI of modern cultivars were associated with allelic variants on chromosome 7A. A hotspot on chromosome 3A was associated with the high NGS, earliness and short stature of SP4.info:eu-repo/semantics/publishedVersio

Using Unmanned Aerial Vehicle and Ground-Based RGB Indices to Assess Agronomic Performance of Wheat Landraces and Cultivars in a Mediterranean-Type Environment

The adaptability and stability of new bread wheat cultivars that can be successfully grown in rainfed conditions are of paramount importance. Plant improvement can be boosted using effective high-throughput phenotyping tools in dry areas of the Mediterranean basin, where drought and heat stress are expected to increase yield instability. Remote sensing has been of growing interest in breeding programs since it is a cost-effective technology useful for assessing the canopy structure as well as the physiological traits of large genotype collections. The purpose of this study was to evaluate the use of a 4-band multispectral camera on-board an unmanned aerial vehicle (UAV) and ground-based RGB imagery to predict agronomic traits as well as quantify the best estimation of leaf area index (LAI) in rainfed conditions. A collection of 365 bread wheat genotypes, including 181 Mediterranean landraces and 184 modern cultivars, was evaluated during two consecutive growing seasons. Several vegetation indices (VI) derived from multispectral UAV and ground-based RGB images were calculated at different image acquisition dates of the crop cycle. The modified triangular vegetation index (MTVI2) proved to have a good accuracy to estimate LAI (R2 = 0.61). Although the stepwise multiple regression analysis showed that grain yield and number of grains per square meter (NGm2) were the agronomic traits most suitable to be predicted, the R2 were low due to field trials were conducted under rainfed conditions. Moreover, the prediction of agronomic traits was slightly better with ground-based RGB VI rather than with UAV multispectral VIs. NDVI and GNDVI, from multispectral images, were present in most of the prediction equations. Repeated measurements confirmed that the ability of VIs to predict yield depends on the range of phenotypic data. The current study highlights the potential use of VI and RGB images as an efficient tool for high-throughput phenotyping under rainfed Mediterranean conditions.info:eu-repo/semantics/publishedVersio

The Effect of Photoperiod Genes and Flowering Time on Yield and Yield Stability in Durum Wheat

This study analysed the effect of flowering time as influenced by photoperiod sensitivity genes on yield and yield stability in durum wheat. Twenty-three spring genotypes harbouring different allele combinations at Ppd-A1 and Ppd-B1 were grown in 15 field experiments at three sites at latitudes from 41° to 19° N (Spain, Mexico-North and Mexico-South). Low temperature and solar radiation before flowering and long day length during grain-filling characteristic for the Spanish site resulted in high grain number/m2 (GN) and yield (GY), while a moderate GN combined with high solar radiation during grain-filling at Mexico-North led to heavier grains. Allele combination GS100-Ppd-A1a/Ppd-B1a reduced the flowering time up to nine days when compared with Ppd-A1b/Ppd-B1a. Differences in flowering time caused by Ppd-A1/Ppd-B1 allele combinations did not affect yield. Combinations GS105-Ppd-A1a/Ppd-B1b and Ppd-A1b/Ppd-B1b resulted in the highest GN, linked to spikelets/spike, which was higher in GS105-Ppd-A1a/Ppd-B1b due to more grains/spikelet. Flowering time caused by Eps had a minor effect on GN, spikes/m2 and grains/spike, but late flowering resulted in reduced grain weight and GY. Allele combinations harbouring alleles conferring a similar photoperiod sensitivity response at Ppd-A1 and Ppd-B1 resulted in greater yield stability than combinations that carry alleles conferring a different response. Allele combination GS100-Ppd-A1a/Ppd-B1a was the most suitable in terms of yield and yield stability of durum wheat cultivated under irrigation within the studied latitudes.info:eu-repo/semantics/publishedVersio

Allelic Variation at the Vernalization Response (Vrn-1) and Photoperiod Sensitivity (Ppd-1) Genes and Their Association With the Development of Durum Wheat Landraces and Modern Cultivars

Wheat adaptability to a wide range of environmental conditions is mostly determined by allelic diversity within genes controlling vernalization requirement (Vrn-1) and photoperiod sensitivity (Ppd-1). We characterized a panel of 151 durum wheat Mediterranean landraces and 20 representative locally adapted modern cultivars for their allelic composition at Vrn-1 and Ppd-1 gene using diagnostic molecular markers and studied their association with the time needed to reach six growth stages under field conditions over 6 years. Compared with the more diverse and representative landrace collection, the set of modern cultivars were characterized by a reduction of 50% in the number of allelic variants at the Vrn-A1 and Vrn-B1 genes, and the high frequency of mutant alleles conferring photoperiod insensitivity at Ppd-A1, which resulted on a shorter cycle length. Vrn-A1 played a greater role than Vrn-B1 in regulating crop development (Vrn-A1 > Vrn-B1). The results suggest that mutations in the Vrn-A1 gene may have been the most important in establishing the spring growth habit of Mediterranean landraces and modern durum cultivars. The allele Vrn-A1d, found in 10 landraces, delayed development. The relative effects of single Vrn-A1 alleles on delaying the development of the landraces were vrn-A1 = Vrn-A1d > Vrn-A1b > Vrn-A1c. Allele vrn-B1 was present in all except two landraces and in all modern cultivars. The null allele at Ppd-A1 (a deletion first observed in the French bread wheat cultivar ‘Capelle-Desprez’) was found for the first time in durum wheat in the present study that identified it in 30 landraces from 13 Mediterranean countries. Allele Ppd-A1a (GS105) was detected in both germplasm types, while the allele Ppd-A1a (GS100) was found only in modern North American and Spanish cultivars. The relative effect of single Ppd-A1 alleles on extending phenological development was Ppd-A1(DelCD) > Ppd-A1b > Ppd-A1a (GS105) > Ppd-A1a (GS100). Sixteen Vrn-1+Ppd-1 allelic combinations were found in landraces and six in modern cultivars, but only three were common to both panels. Differences in the number of days to reach anthesis were 10 days in landraces and 3 days in modern cultivars. Interactive effects between Vrn-1 and Ppd-1 genes were detected.info:eu-repo/semantics/publishedVersio

Unravelling the relationship between adaptation pattern and yield formation strategies in Mediterranean durum wheat landraces

Understanding the environmental and genetic factors behind the adaptation of landraces to different environments may help design breeding strategies and to promote yield improvement. Based on previous results that showed a differential frequency of alleles associated with important agronomic traits in landraces that originated in the east (EM) and the west (WM) of the Mediterranean Basin, this study analysed their patterns of adaptation and the influence this adaptation has on yield formation strategies. Thirteen and thirty-one genotypes selected according to their membership coefficient (q>0.900) from the EM and the WM genetic subpopulations, respectively, were tested during six crop seasons under rainfed Mediterranean conditions. Yearly yields ranged from 3173 to 4917 kg/ha. EM landraces showed more spikes per unit area, while WM ones showed consistently taller plants, larger cycle length to anthesis, a shorter grain filling period, a higher grain filling rate and heavier grains. The contrasting pattern of adaptation of the two subpopulations was based on a differential ability to use the water available before and after anthesis. The yield of EM landraces, originated in the warmest and driest area of the Mediterranean basin, relied mostly on water input before anthesis, which was beneficial for spike production and for the accumulation of water-soluble carbohydrates in the stems prior to anthesis, to be remobilized to grains during grain filling. WM landraces performed better in environments with high water input during grain filling, which was efficiently used to increase grain setting and produce heavy grains. EM landraces could be used in breeding to improve the adaptation of modern varieties to terminal drought.info:eu-repo/semantics/publishedVersio

Transcriptomic and proteomic analyses of a pale-green durum wheat mutant shows variations in photosystem components and metabolic deficiencies under drought stress

Background: Leaf pigment content is an important trait involved in environmental interactions. In order to determine its impact on drought tolerance in wheat, we characterized a pale-green durum wheat mutant (Triticum turgidum L. var. durum) under contrasting water availability conditions. Results: The pale-green mutant was investigated by comparing pigment content and gene/protein expression profiles to wild-type plants at anthesis. Under well-watered (control) conditions the mutant had lower levels of chlorophylls and carotenoids, but higher levels of xanthophyll de-epoxidation compared to wild-type. Transcriptomic analysis under control conditions showed that defense genes (encoding e.g. pathogenesis-related proteins, peroxidases and chitinases) were upregulated in the mutant, suggesting the presence of mild oxidative stress that was compensated without altering the net rate of photosynthesis. Transcriptomic analysis under terminal water stress conditions, revealed the modulation of antioxidant enzymes, photosystem components, and enzymes representing carbohydrate metabolism and the tricarboxylic acid cycle, indicating that the mutant was exposed to greater oxidative stress than the wild-type plants, but had a limited capacity to respond. We also compared the two genotypes under irrigated and rain-fed field conditions over three years, finding that the greater oxidative stress and corresponding molecular changes in the pale-green mutant were associated to a yield reduction. Conclusions: This study provides insight on the effect of pigment content in the molecular response to drought. Identified genes differentially expressed under terminal water stress may be valuable for further studies addressing drought resistance in wheat.A. Peremarti is supported by the AGROTECNIO Foundation. The support of the Efficient Use of Water Program of IRTA is acknowledged. This study was partially funded by MICINN (Spain) under projects AGL2009- 11187, AGL2012-37217 and RTA2009-00085-00, and by MIUR (Italy) under the project ISCOCEM. AP, DV, CR authors are part of the Centre CONSOLIDER INGENIO 2010 on Agrigenomics funded by the Spanish Ministry of Education and Science