Truncation of gene F5L partially masks rescue of vaccinia virus strain MVA growth on mammalian cells by restricting plaque size

Modified vaccinia virus Ankara (MVA) is a candidate vaccine vector that is severely attenuated due to mutations acquired during several hundred rounds of serial passage in vitro. A previous study used marker rescue to produce a set of MVA recombinants with improved replication on mammalian cells. Here, we extended the characterization of these rescued MVA strains and identified vaccinia virus (VACV) gene F5L as a determinant of plaque morphology but not replication in vitro. F5 joins a growing group of VACV proteins that influence plaque formation more strongly than virus replication and which are disrupted in MVA. These defective genes in MVA confound the interpretation of marker rescue experiments designed to map mutations responsible for the attenuation of this important VACV strain.This work was funded by grants to DCT: NHMRC APP1023141 and ARC FT110100310

A Numerical Minimization Scheme for the Complex Helmholtz Equation

We use the work of Milton, Seppecher, and Bouchitt\'{e} on variational principles for waves in lossy media to formulate a finite element method for solving the complex Helmholtz equation that is based entirely on minimization. In particular, this method results in a finite element matrix that is symmetric positive-definite and therefore simple iterative descent methods and preconditioning can be used to solve the resulting system of equations. We also derive an error bound for the method and illustrate the method with numerical experiments.Comment: 18 pages, 4 figure

Changes of partitioning and increased root lengths of spruce and beech exposed to ambient pollution concentrations in southern England

International audienc

Liquid cooling of non-uniform heat flux of chip circuit by submicrochannels

Sumbmicrochannels have been placed on the hotspots in a non-uniform heat generated chip circuit to increase the liquid/solid interaction area and then to enhance the heat dissipation. Main microchannels width is 185µm, which is twice the width of the submicrochannels and also includes the wall thickness of 35µm, and wall height is 500µm. The chip dimension is 10mm×10mm and the hotspot is 4mm×10m. Different positions of the hotspot have been investigated e.g. upstream, middle and downstream. Uniform heat flux is 100W/cm2 while for the hot spot is 150 W/cm2. Single channel simulation reveals that the downstream hotspot gives a lower temperature of the chip circuit surface; however the upstream hotspot has more uniform temperature distribution. A special design of manifold was adopted to ensure an equal mass distribution through the microchannels

Within-field variability of plant and soil parameters

The variability of ground truth data collected for vegetation experiments was investigated. Two fields of wheat and one field of corn were sampled on two different dates. The variability of crop and soil parameters within a field, between two fields of the same type, and within a field over time were compared statistically. The number of samples from each test site required in order to be able to determine with confidence the mean and standard deviations for a given variable was determined. Eight samples were found to be adequate for plant height determinations, while twenty samples were required for plant moisture and soil moisture characterization. Eighteen samples were necessary for detecting within field variability over time and for between field variability for the same crop. The necessary sample sites vary according to the physiological growth stage of the crop and recent weather events that affect the moisture and/or height characteristics of the field in question

Linking eye design with host symbiont relationships in pontoniine shrimps (crustacea, decapoda, palaemonidae)

Symbiosis is prevalent in the marine environment with many studies examining the effects of such interactions between host and symbiont. Pontoniine shrimps are a group whose ecology is characterised by symbiotic interactions. This investigation examines the gross morphology of Pontoniinae compound eyes and superficial optical parameters with reference to their symbiotic relationship or lifestyle category; free-living, ectosymbiont, endosymbiont (bivalves) or endosymbiont (non-bivalves). The eye morphologies of free-living and ectosymbiotic species are very similar, yet differ from both forms of endosymbiotic species. Endosymbionts have significantly smaller and simpler eyes with larger facets and bigger interommatidial angles and eye parameters for increased sensitivity levels. However bivalve endosymbionts form an intermediary group between non-bivalve endosymbionts and ectosymbionts as a result of their more active lifestyle. The accessory eye or "nebenauge", although of uncertain function, commonly occurs in free-living Pontoniinae species but rarely in endosymbionts apart from in more primitive species. The variation in morphology reflects tensions between functional requirements and ecological pressures that have strongly influenced eye design in Pontoniinae. © 2014 Dobson et al

New insights into the biomechanics of Legg-Calvé-Perthes’ disease: The role of epiphyseal skeletal immaturity in vascular obstruction

ObjectivesLegg–Calvé–Perthes’ disease (LCP) is an idiopathic osteonecrosis of the femoral head that is most common in children between four and eight years old. The factors that lead to the onset of LCP are still unclear; however, it is believed that interruption of the blood supply to the developing epiphysis is an important factor in the development of the condition.MethodsFinite element analysis modelling of the blood supply to the juvenile epiphysis was investigated to understand under which circumstances the blood vessels supplying the femoral epiphysis could become obstructed. The identification of these conditions is likely to be important in understanding the biomechanics of LCP.ResultsThe results support the hypothesis that vascular obstruction to the epiphysis may arise when there is delayed ossification and when articular cartilage has reduced stiffness under compression.ConclusionThe findings support the theory of vascular occlusion as being important in the pathophysiology of Perthes disease

Assessment of radar resolution requirements for soil moisture estimation from simulated satellite imagery

Radar simulations were performed at five-day intervals over a twenty-day period and used to estimate soil moisture from a generalized algorithm requiring only received power and the mean elevation of a test site near Lawrence, Kansas. The results demonstrate that the soil moisture of about 90% of the 20-m by 20-m pixel elements can be predicted with an accuracy of + or - 20% of field capacity within relatively flat agricultural portions of the test site. Radar resolutions of 93 m by 100 m with 23 looks or coarser gave the best results, largely because of the effects of signal fading. For the distribution of land cover categories, soils, and elevation in the test site, very coarse radar resolutions of 1 km by 1 km and 2.6 km by 3.1 km gave the best results for wet moisture conditions while a finer resolution of 93 m by 100 m was found to yield superior results for dry to moist soil conditions

Thermocouple heating impact on the temperature measurement of small volume of water in a cooling system

Experimental and numerical analyses have been performed to investigate the heating impact of using a thermocouple for the temperature measurement of a small volume of cold water (∼24 mm3), due to thermal conduction through the wires. Two sizes of K-type thermocouple, 80 µm and 315 µm, were used to measure the temperature of cold water inside a small, thermally regulated chamber within a Centeo TG40 cooling system. The results show that thermal conduction from the ambient environment into the cold water produces a heating effect. This effect decreases for greater submersion depth of the thermocouple junction and is eliminated when the thermocouple junction is close to the copper bottom of the chamber. The inclusion of an insert into the chamber increases the thermal resistance between the copper block and the water, raising the heating effect of the thermocouple. The cooling effect of the copper block on the water is diminished when the air gap between copper block and plastic insert is increased, consequently raising the temperature inside the small well. Moreover, increasing the water height inside the large well has a negligible effect on the temperature of the small well