884 research outputs found
von Neumann Stability Analysis of Globally Constraint-Preserving DGTD and PNPM Schemes for the Maxwell Equations using Multidimensional Riemann Solvers
The time-dependent equations of computational electrodynamics (CED) are
evolved consistent with the divergence constraints. As a result, there has been
a recent effort to design finite volume time domain (FVTD) and discontinuous
Galerkin time domain (DGTD) schemes that satisfy the same constraints and,
nevertheless, draw on recent advances in higher order Godunov methods. This
paper catalogues the first step in the design of globally constraint-preserving
DGTD schemes. The algorithms presented here are based on a novel DG-like method
that is applied to a Yee-type staggering of the electromagnetic field variables
in the faces of the mesh. The other two novel building blocks of the method
include constraint-preserving reconstruction of the electromagnetic fields and
multidimensional Riemann solvers; both of which have been developed in recent
years by the first author. We carry out a von Neumann stability analysis of the
entire suite of DGTD schemes for CED at orders of accuracy ranging from second
to fourth. A von Neumann stability analysis gives us the maximal CFL numbers
that can be sustained by the DGTD schemes presented here at all orders. It also
enables us to understand the wave propagation characteristics of the schemes in
various directions on a Cartesian mesh. We find that the CFL of DGTD schemes
decreases with increasing order. To counteract that, we also present
constraint-preserving PNPM schemes for CED. We find that the third and fourth
order constraint-preserving DGTD and P1PM schemes have some extremely
attractive properties when it comes to low-dispersion, low-dissipation
propagation of electromagnetic waves in multidimensions. Numerical accuracy
tests are also provided to support the von Neumann stability analysis
Lagrangian ADER-WENO Finite Volume Schemes on Unstructured Triangular Meshes Based On Genuinely Multidimensional HLL Riemann Solvers
In this paper we use the genuinely multidimensional HLL Riemann solvers
recently developed by Balsara et al. to construct a new class of
computationally efficient high order Lagrangian ADER-WENO one-step ALE finite
volume schemes on unstructured triangular meshes. A nonlinear WENO
reconstruction operator allows the algorithm to achieve high order of accuracy
in space, while high order of accuracy in time is obtained by the use of an
ADER time-stepping technique based on a local space-time Galerkin predictor.
The multidimensional HLL and HLLC Riemann solvers operate at each vertex of the
grid, considering the entire Voronoi neighborhood of each node and allows for
larger time steps than conventional one-dimensional Riemann solvers. The
results produced by the multidimensional Riemann solver are then used twice in
our one-step ALE algorithm: first, as a node solver that assigns a unique
velocity vector to each vertex, in order to preserve the continuity of the
computational mesh; second, as a building block for genuinely multidimensional
numerical flux evaluation that allows the scheme to run with larger time steps
compared to conventional finite volume schemes that use classical
one-dimensional Riemann solvers in normal direction. A rezoning step may be
necessary in order to overcome element overlapping or crossing-over. We apply
the method presented in this article to two systems of hyperbolic conservation
laws, namely the Euler equations of compressible gas dynamics and the equations
of ideal classical magneto-hydrodynamics (MHD). Convergence studies up to
fourth order of accuracy in space and time have been carried out. Several
numerical test problems have been solved to validate the new approach
Resonance Energy Transfer
Resonance energy transfer, also known as Förster- or fluorescence- resonance energy transfer, or electronic energy transfer, is a photonic process whose relevance in many major areas of science is reflected both by a wide prevalence of the effect and through numerous technical applications. The process, operating through an optical near-field mechanism, effects a transport of electronic excitation between physically distinct atomic or molecular components, based on transition dipole-dipole coupling. In this chapter a comprehensive survey of the process is presented, beginning with an outline of the history and highlighting the early contributions of Perrin and Förster. A review of the photophysics behind resonance energy transfer follows, and then a discussion of some prominent applications of resonance energy transfer. Particular emphasis is given to analysis and sensing techniques used in molecular biology, ranging from the ‘spectroscopic ruler’ measurements of functional group separation, to fluorescence lifetime microscopy. The chapter ends with a description of the role of energy transfer in photosynthetic light harvesting
Structural biology of riboswitch-mediated gene regulation and Argonaute-mediated gene silencing
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