108 research outputs found
Power computation for the triboelectric nanogenerator
We consider, from a mathematical perspective, the power generated by a
contact-mode triboelectric nanogenerator, an energy harvesting device that has
been well studied recently. We encapsulate the behaviour of the device in a
differential equation, which although linear and of first order, has periodic
coefficients, leading to some interesting mathematical problems. In studying
these, we derive approximate forms for the mean power generated and the current
waveforms, and describe a procedure for computing the Fourier coefficients for
the current, enabling us to show how the power is distributed over the
harmonics. Comparisons with accurate numerics validate our analysis
Model multiple antigenic and homopolymeric peptides from non-repetitive sequences of malaria merozoite proteins elicit biologically irrelevant antibodies
AbstractThree model peptides containing B-epitopes from conserved, non-repetitive regions of the merozoite surface antigens, MSA2 and MSA1, and the erythrocyte binding protein EBP of Plasmodium falciparum were synthesised. The peptides incorporated GPG spacers and C residues at the N and C termini, and were polymerised by oxidation to form cystine bridges. Multiple copies of essentially the same peptide sequences were also synthesised on a branching lysyl matrix to form a tetrameric multiple antigen peptide. Rabbits were immunised with the polymerised and multiple antigen peptides, in alum followed by Freund’s adjuvant, and the antibody responses examined by IFA and ELISA. Reproducible antibody responses were obtained against the MSA1 and EBP but not MSA2 peptides. IgG antibody levels detected by ELISA after three injections of antigen in alum, increased significantly after further immunisation in Freund’s adjuvant. IgG levels were largely maintained for at least 23 weeks after the final immunisation. IgM antibodies, generally detectable only after immunisation in Freund’s adjuvant, were absent 23 weeks later. Antibody titres against the native protein on fixed parasites, assayed by IFA, were three to five orders of magnitude lower than the corresponding ELISA titres against the peptides. Antibody-dependent inhibition of P. falciparum growth in vitro could not be demonstrated with the immune rabbit sera. The MSA1 and EBP peptides elicited cross-reactive antibodies. The results suggest that the selected non-repetitive sequences are conformationally constrained in the native proteins and only a small proportion of the anti-peptide antibodies bind to the native proteins. The significance of the findings for the development of peptide vaccines and the use of peptides in immunoassays is discussed
Anti-tumour heterocycles : part 16 : the synthesis of 7,10-dimethoxyellipticine and its pyrrolo[2,3-f]carbazole and pyrrolo[3,2-f] analogues
The final examples in our ellipticine/pyrrolocarbazole synthesis programme are 7,10-dimethoxyellipticine 1a and the corresponding pyrrolocarbazoles 2a and 3a which have been synthesised from 4,6-dimethoxyindole
Atomic Fluorine Beam Etching Of Silicon And Related Materials
A 1 eV neutral atomic fluorine beam has been shown to produce etch rates in silicon as high as 1 µm/min. Using a CaF 2 resist layer we fabricated 120 µm-deep by 1 µm-wide trenches (aspect ratio 120:1) in silicon with little sidewall taper (slopes of about 1000:1) or aspect-ratio dependent etching effects. Achieving such anisotropic etching suggests that the scattered species do not contribute significantly to sidewall etching under the conditions of this experiment. We estimate that the ultimate depth attainable for a 1 µm-wide trench is about 250 µm and that the critical parameter for attaining a trench of a certain depth is the aspect ratio. Our observations and analysis suggest that this etching technique can be used to fabricate trenches on a nanoscale level while maintaining high aspect ratios of 100 or greater. JVST_web.doc 09/12/99
Subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in<i>Arabidopsis thaliana</i>
Summar
The calcium-dependent protein kinase CPK28 is a regulator of immune homeostasis in multiple plant species. Here, we used a proteomics approach to uncover CPK28-associated proteins. We found that CPK28 associates with subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39, and trans-phosphorylates RAF26 and RAF39. Metazoan Raf kinases function in mitogen-activated protein kinase (MAPK) cascades as MAPK kinase kinases (MKKKs). Although Raf-like kinases share some features with MKKKs, we found that MRK1, RAF26, and RAF39 are unable to trans-phosphorylate any of the 10 Arabidopsis MKKs. We show that MRK1, RAF26, and RAF39 localize to the cytosol and endomembranes, and we define redundant roles for these kinases in stomatal opening, immune-triggered reactive oxygen species (ROS) production, and resistance to a bacterial pathogen. Overall, our study suggests that C7 Raf-like kinases associate with and are phosphorylated by CPK28, function redundantly in stomatal immunity, and possess substrate specificities distinct from canonical MKKKs
Utilization of a deoxynucleoside diphosphate substrate by HIV reverse transcriptase
Background: Deoxynucleoside triphosphates (dNTPs) are the normal substrates for DNA sysnthesis is catalyzed by polymerases such as HIV-1 reverse transcriptase (RT). However, substantial amounts of deoxynucleoside diphosphates (dNDPs) are also present in the cell. Use of dNDPs in HIV-1 DNA sysnthesis could have significant implications for the efficacy of nucleoside RT inhibitors such as AZT which are first line therapeutics fro treatment of HIV infection. Our earlier work on HIV-1 reverse transcriptase (RT) suggested that the interaction between the γ phosphate of the incoming dNTP and RT residue K65 in the active site is not essential for dNTP insertion, implying that this polymerase may be able to insert dNPs in addition to dNTPs. Methodology/Principal Findings: We examined the ability of recombinant wild type (wt) and mutant RTs with substitutions at residue K65 to utilize a dNDP substrate in primer extension reactions. We found that wild type HIV-1 RT indeed catalyzes incorporation of dNDP substrates whereas RT with mutations of residue K645 were unable to catalyze this reaction. Wild type HIV-1 RT also catalyzed the reverse reaction, inorganic phosphate-dependent phosphorolysis. Nucleotide-mediated phosphorolytic removal of chain-terminating 3′-terminal nucleoside inhibitors such as AZT forms the basis of HIV-1 resistance to such drugs, and this removal is enhanced by thymidine analog mutations (TAMs). We found that both wt and TAM-containing RTs were able to catalyze Pi-mediated phosphorolysis of 3′-terminal AZT at physiological levels of Pi with an efficacy similar to that for ATP-dependent AZT-excision. Conclusion: We have identified two new catalytic function of HIV-1 RT, the use of dNDPs as substrates for DNA synthesis, and the use of Pi as substrate for phosphorolytic removal of primer 3′-terminal nucleotides. The ability to insert dNDPs has been documented for only one other DNA polymerase The RB69 DNA polymerase and the reverse reaction employing inorganic phosphate has not been documented for any DNA polymerase. Importantly, our results show that Pi-mediated phosphorolysis can contribute to AZT resistance and indicates that factors that influence HIV resistance to AZT are more complex than previously appreciated. © 2008 Garforth et al
The use of common bean (Phaseolus vulgaris ) traditional varieties and their mixtures with commercial varieties to manage bean fly (Ophiomyia spp .) infestations in Uganda
The bean fly (Ophiomyia spp.) is considered the most economically damaging field insect pest of common beans in Uganda. Despite the use of existing pest management approaches, reported damage has remained high. Forty-eight traditional and improved common bean varieties currently grown in farmers’ fields were evaluated for resistance against bean fly. Data on bean fly incidence, severity and root damage from bean stem maggot were collected. Generalized linear mixed model (GLMM) revealed significant resistance to bean fly in the Ugandan traditional varieties. A popular resistant traditional variety and a popular susceptible commercial variety were selected from the 48 varieties and evaluated in pure and mixed stands. The incidence of bean fly infestation on both varieties in mixtures with different arrangements (systematic random versus rows), and different proportions within each of the two arrangements, was measured and analysed using GLMMs. The proportion of resistant varieties in a
mixture and the arrangement type significantly decreased bean fly damage compared to pure stands, with the highest decrease in damage registered in the systematic random mixture with at least 50 % of resistant variety. The highest reduction in root damage, obvious 21 days after planting, was found in systematic random mixtures with at least 50 % of the resistant variety. Small holder farmers in East Africa and elsewhere in the world have local preferences for growing bean varieties in genetic mixtures. These mixtures can be enhanced by the use of resistant varieties in the mixtures to reduce bean fly damage on susceptible popular varieties
A new direct detection electron scattering experiment to search for the X17 particle
A new electron scattering experiment (E12-21-003) to verify and understand
the nature of hidden sector particles, with particular emphasis on the
so-called X17 particle, has been approved at Jefferson Lab. The search for
these particles is motivated by new hidden sector models introduced to account
for a variety of experimental and observational puzzles: excess in
pairs observed in multiple nuclear transitions, the 4.2 disagreement
between experiments and the standard model prediction for the muon anomalous
magnetic moment, and the small-scale structure puzzle in cosmological
simulations. The aforementioned X17 particle has been hypothesized to account
for the excess in pairs observed from the Be M1, He M0, and,
most recently, C E1 nuclear transitions to their ground states observed
by the ATOMKI group. This experiment will use a high resolution electromagnetic
calorimeter to search for or set new limits on the production rate of the X17
and other hidden sector particles in the MeV mass range via their
decay (or decay with limited tracking). In these
models, the MeV mass range is particularly well-motivated and the
lower part of this range still remains unexplored. Our proposed direct
detection experiment will use a magnetic-spectrometer-free setup (the PRad
apparatus) to detect all three final state particles in the visible decay of a
hidden sector particle for an effective control of the background and will
cover the proposed mass range in a single setting. The use of the
well-demonstrated PRad setup allows for an essentially ready-to-run and
uniquely cost-effective search for hidden sector particles in the MeV
mass range with a sensitivity of 8.910 - 5.810 to
, the square of the kinetic mixing interaction constant between
hidden and visible sectors.Comment: 6 pages, 7 figures. arXiv admin note: substantial text overlap with
arXiv:2108.1327
Cross-over data supporting long-term antibiotic treatment in patients with painful lower urinary tract symptoms, pyuria and negative urinalysis
PURPOSE: To measure the effects of an unplanned, sudden cessation of treatment in an unselected group of patients with chronic painful LUTS managed with protracted antimicrobial treatment and to report these observational data collected from a cross-over process. MATERIALS AND METHODS: The imposition of a guideline resulted in the immediate cessation of antibiotic treatment in a cohort of patients with chronic painful LUTS and microscopic pyuria. Patients were assessed before treatment withdrawal, whilst off treatment, and following reinstatement. Outcome measures included a validated symptom score, microscopic enumeration of urinary white cells and uroepithelial cells, and routine urine culture. RESULTS: These patients had reported treatment-resistant, painful LUTS for a mean of 6.5 years before treatment at this centre. Treatment was stopped in 221 patients (female = 210; male = 11; mean age = 56 years; SD = 17.81). Sixty-six per cent of women were post-menopausal. After unplanned treatment cessation, 199 patients (90%; female = 188; male = 9) reported deterioration. Eleven patients required hospital care in association with disease recurrence, including acute urinary tract infection (UTI) and urosepsis. Symptom scores increased after cessation and recovered on reinitiating treatment (F = 33; df = 2; p < 0.001). Urinary leucocyte (F = 3.7; df = 2; p = 0.026) and urothelial cells counts mirrored symptomatic changes (F = 6.0; df = 2; p = 0.003). Routine urine culture results did not reflect changes in disease status. CONCLUSION: These data support the hypothesis that treating painful LUTS associated with pyuria with long-term antimicrobial courses, despite negative urine culture, is effective. The microscopy of fresh unspun, unstained urine to count white cells and epithelial cells offers a valid method of monitoring disease. An unplanned cessation of antibiotic therapy produced a resurgence of symptoms and lower urinary tract inflammation in patients with chronic LUTS, supporting an infective aetiology below the level of routine detection
- …