Prioritizing taxa for genetic reference database development to advance inland water conservation

Biodiversity loss has accelerated over the past century and freshwater species overall are among those experiencing greatest declines. Genetic resources have the potential to help evaluate the full magnitude of this loss and represent a key tool to effectively allocate conservation resources and monitor the success of restoration efforts. The full power of genetic resources will be realized when the daunting task of referencing all DNA sequences of freshwater organisms is complete. Here, we quantified the availability and distribution of barcode and genome data for freshwater macroscopic organisms in Canada, a country rich in inland water resources and thus particularly vulnerable to aquatic species losses. Impressively, most inland water species (86 %) were represented by barcodes recorded in the BOLD Systems database, while very few had full genomes available (<4 %) in the NCBI database. We identified barcode data deficiencies in northern regions and for taxa assessed as most at risk or without sufficient information for conservation status classification. As expected, the speciose insect group had a lower-than-average number of records per species and a high proportion of data deficient species without adequate barcode coverage. This study highlights where future sequencing resources should be prioritized within initiatives such as the Canada BioGenome Project and BIOSCAN Canada and provides a workflow that could be applied internationally to inform conservation management plans and to mitigate biodiversity loss

The alarming state of freshwater biodiversity in Canada

Little is known about the current state of freshwater biodiversity in Canada, one of the countries with the greatest amount of surface waters in the world. To address this knowledge gap, we compiled a list of all available assessments of conservation status for freshwater species (over 3000 taxa) and further evaluated the overall status of six distinct taxonomic groups, focusing on organisms reliant on fresh waters (i.e., aquatic plants, invertebrates (with a focus on freshwater mussels), fishes, herpetofauna (reptiles and amphibians), birds, and mammals). Overall, 11.7% of all freshwater species of plants and animals assessed were found to be at risk (i.e., listed as Threatened , Endangered , or Extirpated ) and 17.9% identified as Special Concern . We found that 37.9% of species lacked sufficient data to enable their status to be assessed. Data gaps in Canada\u27s assessment of its freshwater species were most prevalent in invertebrates (excluding freshwater mussels). Given the alarming state of freshwater biodiversity in Canada, we conclude by providing recommendations that focus on evaluating temporal trends and informing conservation actions

The Ecological Relevance of Critical Thermal Maxima Methodology ( CTM ) for Fishes

Critical thermal maxima methodology (CTM) has been used to infer acute upper thermal tolerance in fishes since the 1950s, yet its ecological relevance remains debated. Here, we synthesize evidence to identify methodological concerns and common misconceptions that have limited the interpretation of CTmax (value for an individual fish during one trial) in ecological and evolutionary studies of fishes. We identify limitations of, and opportunities for, using CTmax as a metric in experiments, focusing on rates of thermal ramping, acclimation regimes, thermal safety margins, methodological endpoints, links to performance traits, and repeatability. Care must be taken when interpreting CTM in ecological contexts, since the protocol was originally designed for ecotoxicological research with standardized methods to facilitate comparisons within study individuals, across species and contexts. CTM can, however, be used in ecological contexts to predict impacts of environmental warming, but only if parameters influencing thermal limits, such as acclimation temperature or rate of thermal ramping, are taken into account. Applications can include mitigating the effects of climate change, informing infrastructure planning or modeling species distribution, adaptation and/or performance in response to climate-related temperature change. Our synthesis points to several key directions for future research that will further aid the application and interpretation of CTM data in ecological contexts

On the alarming state of freshwater biodiversity in Canada

Little is known about the current state of freshwater biodiversity in Canada, one of the countries with the greatest amount of surface waters in the world. To address this knowledge gap, we compiled a list of all available assessments of conservation status for freshwater species (over 3,000 taxa) and further evaluated the overall status of six distinct taxonomic groups, focusing on organisms reliant on freshwaters [i.e., aquatic plants, invertebrates (with a focus on freshwater mussels), fishes, herpetofauna (reptiles and amphibians), birds, and mammals]. Overall, 11.7% of all freshwater species of plants and animals assessed were found to be ‘at risk’ (i.e., listed as ‘Threatened’, ‘Endangered’, or ‘Extirpated’) and 17.9% identified as ‘Special Concern’. We found that 37.9% of species lacked sufficient data to enable their status to be assessed. Data gaps in Canada’s assessment of its freshwater species were most prevalent in invertebrates (excluding freshwater mussels). Given the alarming state of freshwater biodiversity in Canada, we conclude by providing recommendations that focus on evaluating temporal trends and informing conservation actions.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author