Transmission and group delay of microring coupled-resonator optical waveguides

We measured the transmission and group delay of microring coupled-resonator optical waveguides (CROWs). The CROWs consisted of 12 weakly coupled, microring resonators fabricated in optical polymers (PMMA on Cytop). The intrinsic quality factor of the resonators was 18,000 and the interresonator coupling was 1%, resulting in a delay of 110-140 ps and a slowing factor of 23-29 over a 17 GHz bandwidth

Polymer Microring Coupled-Resonator Optical Waveguides

We present measurements of the transmission and dispersion properties of coupled-resonator optical waveguides (CROWs) consisting of weakly coupled polymer microring resonators. The fabrication and the measurement methods of the CROWs are discussed as well. The experimental results agree well with the theoretical loss, waveguide dispersion, group delay, group velocity, and group-velocity dispersion (GVD). The intrinsic quality factors of the microrings were about 1.5 times 10^4 to 1.8 times 10^4, and group delays greater than 100 ps were measured with a GVD between -70 and 100 ps/(nm x resonator). With clear and simple spectral responses and without a need for the tuning of the resonators, the polymer microring CROWs demonstrate the practicability of using a large number of microresonators to control the propagation of optical waves

Leaf Area and Structural Changes after Thinning in Even-Aged Picea rubens and Abies balsamea Stands in Maine, USA

We tested the hypothesis that changes in leaf area index (LAI m2 m−2) and mean stand diameter following thinning are due to thinning type and residual density. The ratios of pre- to postthinning diameter and LAI were used to assess structural changes between replicated crown, dominant, and low thinning treatments to 33% and 50% residual density in even-aged Picea rubens and Abies balsamea stands with and without a precommercial thinning history in Maine, USA. Diameter ratios varied predictably by thinning type: low thinnings were 0.7 but 1.0 . LAI change was affected by type and intensity of thinning. On average, 33% density reduction removed 50% of LAI. Overall reduction of LAI was generally greatest in dominant thinnings (54%), intermediate in crown thinnings (46%), and lowest in low thinnings (35%). Upon closer examination by crown classes, the postthinning distribution of LAI between upper and lower crown classes varied by thinning history, thinning method, and amount of density reduction

Electrically-pumped, broad-area, single-mode photonic crystal lasers

Planar broad-area single-mode lasers, with modal widths of the order of tens of microns, are technologically important for high-power applications and improved coupling efficiency into optical fibers. They may also find new areas of applications in on-chip integration with devices that are of similar size scales, such as for spectroscopy in microfluidic chambers or optical signal processing with micro-electromechanical systems. An outstanding challenge is that broad-area lasers often require external means of control, such as injection-locking or a frequency/spatial filter to obtain single-mode operation. In this paper, we propose and demonstrate effective index-guided, large-area, edge-emitting photonic crystal lasers driven by pulsed electrical current injection at the optical telecommunication wavelength of 1550nm. By suitable design of the photonic crystal lattice, our lasers operate in a single mode with a 1/e^2 modal width of 25μm and a length of 600μm

Active coupled-resonator optical waveguides. II. Current injection InP-InGaAsP Fabry-Perot resonator arrays

We investigate active, electrically pumped coupled-resonator optical waveguides (CROWs) in the form of InP-InGaAsP Fabry-Perot resonator arrays. We discuss the fabrication of these devices and present measurements of the transmission spectra. The signal-to-noise ratio is found to be a strong function of wavelength and degraded rapidly along the resonator chain away from the input. Our results highlight a number of ingredients toward practical implementations loss-compensated and amplifying CROWs

Two-dimensional Bragg grating lasers defined by electron-beam lithography

Two-dimensional Bragg grating (2DBG) lasers with two quarter-wave slip line defects have been designed and fabricated by electron-beam lithography and reactive ion etching. Unlike conventional two-dimensional photonic crystal defect lasers, which use a large refractive index perturbation to confine light in a plane, the 2DBG structures described here selectively control the longitudinal and transverse wave vector components using a weak index perturbation. Two line defects perpendicular to each other are introduced in the 2DBG to define the optical resonance condition in the longitudinal and transverse directions. In this article, we describe the lithography process used to pattern these devices. The 2DBG lasers were defined using polymethylmethacrylate resist exposed in a Leica Microsystems EBPG 5000+ electron-beam writer at 100 kV. A proximity correction code was used to obtain a uniform pattern distribution over a large area, and a dosage matrix was used to optimize the laser design parameters. Measurements of electrically pumped 2DBG lasers showed modal selection in both the longitudinal and transverse directions due to proper design of the grating and defects, making them promising candidates for single-mode, high power, high efficiency, large-area lasers

Transcription-related mutations and GC content drive variation in nucleotide substitution rates across the genomes of Arabidopsis thaliana and Arabidopsis lyrata

BACKGROUND: There has been remarkably little study of nucleotide substitution rate variation among plant nuclear genes, in part because orthology is difficult to establish. Orthology is even more problematic for intergenic regions of plant nuclear genomes, because plant genomes generally harbor a wealth of repetitive DNA. In theory orthologous intergenic data is valuable for studying rate variation because nucleotide substitutions in these regions should be under little selective constraint compared to coding regions. As a result, evolutionary rates in intergenic regions may more accurately reflect genomic features, like recombination and GC content, that contribute to nucleotide substitution. RESULTS: We generated a set of 66 intergenic sequences in Arabidopsis lyrata, a close relative of Arabidopsis thaliana. The intergenic regions included transposable element (TE) remnants and regions flanking the TEs. We verified orthology of these amplified regions both by comparison of existing A. lyrata – A. thaliana genetic maps and by using molecular features. We compared substitution rates among the 66 intergenic loci, which exhibit ~5-fold rate variation, and compared intergenic rates to a set of 64 orthologous coding sequences. Our chief observations were that the average rate of nucleotide substitution is slower in intergenic regions than in synonymous sites, that rate variation in both intergenic and coding regions correlate with GC content, that GC content alone is not sufficient to explain differences in rates between intergenic and coding regions, and that rates of evolution in intergenic regions correlate negatively with gene density. CONCLUSION: Our observations indicated that mutation rates vary among genomics regions as a function of base composition, suggesting that previous observations of "selective constraint" on non-coding regions could more accurately be attributed to a GC effect instead of selection. The negative correlation between nucleotide substitution rate and gene density provides a potential neutral explanation for a previously documented correlation between gene density and polymorphism levels within A. thaliana. Finally, we discuss potential forces that could contribute to rapid synonymous rates, and provide evidence to suggest that transcription-related mutation contributes to rate differences between intergenic and synonymous sites

A comparative computational analysis of nonautonomous Helitron elements between maize and rice

BackgroundHelitrons are DNA transposable elements that are proposed to replicate via a rolling circle mechanism. Non-autonomous helitron elements have captured gene fragments from many genes in maize (Zea mays ssp. mays) but only a handful of genes in Arabidopsis (Arabidopsis thaliana). This observation suggests very different histories for helitrons in these two species, but it is unclear which species contains helitrons that are more typical of plants.ResultsWe performed computational searches to identify helitrons in maize and rice genomic sequence data. Using 12 previously identified helitrons as a seed set, we identified 23 helitrons in maize, five of which were polymorphic among a sample of inbred lines. Our total sample of maize helitrons contained fragments of 44 captured genes. Twenty-one of 35 of these helitrons did not cluster with other elements into closely related groups, suggesting substantial diversity in the maize element complement. We identified over 552 helitrons in the japonica rice genome. More than 70% of these were found in a collinear location in the indica rice genome, and 508 clustered as a single large subfamily. The japonica rice elements contained fragments of only 11 genes, a number similar to that in Arabidopsis. Given differences in gene capture between maize and rice, we examined sequence properties that could contribute to differences in capture rates, focusing on 3' palindromes that are hypothesized to play a role in transposition termination. The free energy of folding for maize helitrons were significantly lower than those in rice, but the direction of the difference differed from our prediction.ConclusionMaize helitrons are clearly unique relative to those of rice and Arabidopsis in the prevalence of gene capture, but the reasons for this difference remain elusive. Maize helitrons do not seem to be more polymorphic among individuals than those of Arabidopsis; they do not appear to be substantially older or younger than the helitrons in either species; and our analyses provided little evidence that the 3' hairpin plays a role

Electrically Pumped, Edge-Emitting, Large-Area Photonic Crystal Lasers with Straight and Angled Facets

We propose and demonstrate electrically pumped, edge-emitting, large-area photonic crystal lasers. Effective index-guided and Bragg-guided lasing modes are obtained depending on the design of photonic crystal and facets

Spitzer observations of Bow Shocks and Outflows in RCW 38

We report Spitzer observations of five newly identified bow shocks in the massive star-forming region RCW 38. Four are visible at IRAC wavelengths, the fifth is visible only at 24 microns. Chandra X-ray emission indicates that winds from the central O5.5 binary, IRS~2, have caused an outflow to the NE and SW of the central subcluster. The southern lobe of hot ionised gas is detected in X-rays; shocked gas and heated dust from the shock-front are detected with Spitzer at 4.5 and 24 microns. The northern outflow may have initiated the present generation of star formation, based on the filamentary distribution of the protostars in the central subcluster. Further, the bow-shock driving star, YSO 129, is photo-evaporating a pillar of gas and dust. No point sources are identified within this pillar at near- to mid-IR wavelengths. We also report on IRAC 3.6 & 5.8 micron observations of the cluster DBS2003-124, NE of RCW 38, where 33 candidate YSOs are identified. One star associated with the cluster drives a parsec-scale jet. Two candidate HH objects associated with the jet are visible at IRAC and MIPS wavelengths. The jet extends over a distance of ~3 pc. Assuming a velocity of 100 km/s for the jet material gives an age of about 30,000 years, indicating that the star (and cluster) are likely to be very young, with a similar or possibly younger age than RCW 38, and that star formation is ongoing in the extended RCW 38 region.Comment: 27 pages, 6 figures, accepted to Ap