The elaborate interplay of natural killer cells and vaccinia virus

Vaccinia virus (VACV) is a poxvirus and is the vaccine used to eradicate smallpox. It is also an expression vector for heterologous antigens and an oncolytic virus for cancer therapy. VACV encodes multiple proteins that aid evasion of the host immune response. There is, however, an incomplete understanding of how this immune suppression by VACV is consistent with such a strong immune response and subsequent memory. There is especially little known about the relationship between natural killer (NK) cells and VACV. Previous studies showed that during VACV infection, NK cells proliferate, are activated, limit viral replication, kill VACV-infected cells and display memory-like qualities. However, how NK cells recognise and interact with VACV-infected cells, which ligand(s) trigger NK cell activation, which NK receptors (NKR) are involved, and whether VACV uses strategies to interfere with the NK cell response remains elusive. This thesis aimed to address such questions using screening methods in parallel to candidate-based approach to tackle the challenges caused by the high diversity of NKRs and NK ligands. First, the responsiveness of murine NK cells to systemic VACV infection was studied ex vivo. Transcriptomic analysis, along with validation at the protein level, indicated NK cell activation and preparedness to mediate effector functions. Analysis of NK cell transcriptomic signature indicated that the stimuli triggering NK cell activation in the context of VACV infection correspond primarily with direct cell recognition but also cytokines such as Il-12 and -18, and IFNs. NKRs expression level in response to VACV was investigated, both at the transcript and protein level, and candidate NKRs involved specifically in the response to VACV were defined. Using a published dataset, the human and murine NK cell response to VACV was compared, revealing strong similarities. Second, the modulation of the plasma membrane (PM) proteome after VACV infection was studied using a proteomic screen that allowed to i) determine how VACV affects NK ligands expression; ii) give insights into VACV host surface protein modulation mechanism; iii) highlight previously unrecognised VACV strategies to evade NK cell response, iv) establish for the first time, a comprehensive analysis of VACV proteins expressed at the host PM and, v) suggest VACV surface proteins that potentially engage with NK cells. Third, the impact of the absence of VACV A56, an NK ligand candidate, and the murine natural cytotoxicity receptor (NCR) NKp46, were studied, in vitro and in vivo, in the context of VACV infection. This confirmed that VACV A56 prevents cell fusion, anchors VACV K2 and VCP (virus complement control protein) at the cell surface and enhances the binding of human and murine NCRs to VACV-infected cells. Further, it revealed that A56 deletion did not affect plaque size or EEV (extracellular enveloped virus) release, did not alter NK ligands surface expression, but led to decreased VACV-infected cells killing by murine NK cells. Lastly, the impact of VACV A56 and NKp46 deletion, on VACV infection outcome were assessed in vivo, in the acute and the memory stage and did not reveal substantial differences. Collectively, these data constitute a valuable resource concerning the interaction of VACV with NK cells and the factors influencing their interplay. These data can contribute to improve the development of VACV-based vaccines vectors and oncolytic viruses, and further our understanding of host-pathogen interactions

Highlighting type A RRs as potential regulators of the dkHK1 multi-step phosphorelay pathway in Populus

In previous studies, we highlighted a multistep phosphorelay (MSP) system in poplars composed of two hybrid-type Histidine aspartate Kinases, dkHK1a and dkHK1b, which interact with three Histidine Phosphotransfer proteins, dkHPt2, 7, and 9, which in turn interact with six type B Response Regulators. These interactions correspond to the dkHK1a-b/dkHPts/dkRRBs MSP. This MSP is putatively involved in an osmosensing pathway, as dkHK1a-b are orthologous to the Arabidopsis osmosensor AHK1, and able to complement a mutant yeast deleted for its osmosensors. Since type A RRs have been characterized as negative regulators in cytokinin MSP signaling due to their interaction with HPt proteins, we decided in this study to characterize poplar type A RRs and their implication in the MSP. For a global view of this MSP, we isolated 10 poplar type A RR cDNAs, and determined their subcellular localization to check the in silico prediction experimentally. For most of them, the in planta subcellular localization was as predicted, except for three RRAs, for which this experimental approach gave a more precise localization. Interaction studies using yeast two-hybrid and in planta BiFC assays, together with transcript expression analysis in poplar organs led to eight dkRRAs being singled out as partners which could interfere the dkHK1a-b/dkHPts/dkRRBs MSP identified in previous studies. Consequently, the results obtained in this study now provide an exhaustive view of dkHK1a-b partners belonging to a poplar MSP

Study on a compact and adaptable Thomson Spectrometer for laser-initiated 11B(p,α)8Be reactions and low-medium energy particle detection

Thomson Spectrometers are of primary importance in the discrimination of particles produced by laser-plasma interaction, according to their energy and charge-mass ratio. We describe here a detailed study on a set of Thomson Spectrometers, adaptable to different experimental situations, with the aim of being placed directly within the experimental chamber, rather than in additional extensions, in order to increase the solid angle of observation. These instruments are suitable for detection of low-medium energy particles and can be effectively employed in laser-plasma experiments of 11B(p,α)8Be fusion. They are provided with permanent magnets, have small dimensions and compact design. In these small configurations electric and magnetic fringing fields play a primary role for particle deflection, and their accurate characterization is required. It was accomplished by means of COMSOL electromagnetic solver coupled to an effective analytical model, very suitable for practical use of the spectrometers. Data from experimental measurements of the magnetic fields have been also used. We describe the application of the spectrometers to an experiment of laser-plasma interaction, coupled to Imaging Plate detectors. Data analysis for spectrum and yield of the detected radiation is discussed in detail. © 2016 ENEA

Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats

BACKGROUND: Aristolochic acid (AA) is the active component of herbal drugs derived from Aristolochia species that have been used for medicinal purposes since antiquity. AA, however, induced nephropathy and urothelial cancer in people and malignant tumors in the kidney and urinary tract of rodents. Although AA is bioactivated in both kidney and liver, it only induces tumors in kidney. To evaluate whether microarray analysis can be used for distinguishing the tissue-specific carcinogenicity of AA, we examined gene expression profiles in kidney and liver of rats treated with carcinogenic doses of AA. RESULTS: Microarray analysis was performed using the Rat Genome Survey Microarray and data analysis was carried out within ArrayTrack software. Principal components analysis and hierarchical cluster analysis of the expression profiles showed that samples were grouped together according to the tissues and treatments. The gene expression profiles were significantly altered by AA treatment in both kidney and liver (p < 0.01; fold change > 1.5). Functional analysis with Ingenuity Pathways Analysis showed that there were many more significantly altered genes involved in cancer-related pathways in kidney than in liver. Also, analysis with Gene Ontology for Functional Analysis (GOFFA) software indicated that the biological processes related to defense response, apoptosis and immune response were significantly altered by AA exposure in kidney, but not in liver. CONCLUSION: Our results suggest that microarray analysis is a useful tool for detecting AA exposure; that analysis of the gene expression profiles can define the differential responses to toxicity and carcinogenicity of AA from kidney and liver; and that significant alteration of genes associated with defense response, apoptosis and immune response in kidney, but not in liver, may be responsible for the tissue-specific toxicity and carcinogenicity of AA

Blocking TGF-β signaling pathway preserves mitochondrial proteostasis and reduces early activation of PDGFRβ+ pericytes in aristolochic acid induced acute kidney injury in wistar male rats

The platelet-derived growth factor receptor β (PDGFRβ)+ perivascular cell activation becomes increasingly recognized as a main source of scar-associated kidney myofibroblasts and recently emerged as a new cellular therapeutic target.In this regard, we first confirmed the presence of PDGFRβ+ perivascular cells in a human case of end-stage aristolochic acid nephropathy (AAN) and thereafter we focused on the early fibrosis events of transforming growth factor β (TGFβ) inhibition in a rat model of AAN.Neutralizing anti-TGFβ antibody (1D11) and its control isotype (13C4) were administered (5 mg/kg, i.p.) at Days -1, 0, 2 and 4; AA (15 mg/kg, sc) was injected daily.At Day 5, 1D11 significantly suppressed p-Smad2/3 signaling pathway improving renal function impairment, reduced the score of acute tubular necrosis, peritubular capillaritis, interstitial inflammation and neoangiogenesis. 1D11 markedly decreased interstitial edema, disruption of tubular basement membrane loss of brush border, cytoplasmic edema and organelle ultrastructure alterations (mitochondrial disruption and endoplasmic reticulum edema) in proximal tubular epithelial cells. Moreover, 1D11 significantly inhibited p-PERK activation and attenuated dysregulation of unfolded protein response (UPR) pathways, endoplasmic reticulum and mitochondrial proteostasis in vivo and in vitro.The early inhibition of p-Smad2/3 signaling pathway improved acute renal function impairment, partially prevented epithelial-endothelial axis activation by maintaining PTEC proteostasis and reduced early PDGFRβ+ pericytes-derived myofibroblasts accumulation

Odalisque's position as a geste antagoniste in a variant phenotype of ataxia-telangiectasia

A 15‐year‐old patient exhibits abnormal movements with dystonic‐myoclonic jerks focused mainly on the neck and upper limbs. These manifestations are invasive and can be exacerbated by movement and, above all, the slightest touch. The symptoms started when he was 2 years old with mild transient ataxia, followed by myoclonus and finally dystonia that quickly became the prominent symptom. Dystonic movements mainly appear in orthostatic position and induce left torticollis combined with severe ipsilateral laterocollis. The boy has spontaneously developed a particular geste antagoniste1 combining lateral decubitus and the application of his left hand on the ipsilateral temple, leading to a caricatured posture reminiscent of the “Odalisques

Experimental study of the stimulated Brillouin scattering saturation at 527 nm

This paper presents the first results obtained with the LULI2000 facility on the stimulated Brillouin scattering (SBS) instability developing at 527 nm on solid targets. We describe the experimental configuration, the plasma parameters and give first results of the SBS as function of laser intensity in these plasmas. The Brillouin reflectivity measured at maximum energy is 8%. The measurements are compared with the Brillouin backscattering expected from linear theory in the exponential density profile