Prevalence and Characterization of Salmonella Isolates from Poultry Farms in Ilorin, Nigeria

Poultry birds are very important source of essential proteins in developing countries, but also play an important role in transmission of Salmonella to human and nonhuman. Exposure to this pathogen also occurs through use of poultry droppings as manure for crop and vegetable production. This study investigated prevalence of Salmonella in feces of poultry farms in Ilorin, Nigeria. Salmonella isolated were further characterized by molecular method. Fecal samples were cultured in pre-enrichment medium, Selenite F medium and finally sub-cultured on Salmonella-Shigella agar. None lactose fermenting colonies with black center were picked for presumptive identification using biochemical tests and confirmed by serological test by method previously described. Molecular characterization was carried out using 16S rRNA gene sequencing following standard procedure. Out of 170 samples collected and examined, 8 (4.7%) gave biochemical characteristics that resembled Salmonella, but only 6 (3.5%) were confirmed as Salmonella by polyvalent antisera. Molecular characterization revealed that serovars isolated were Salmonella Enteritidis 3 (1.8%) and Salmonella Paratyphi 3 (1.8%). Phylogenetic tree constructed by neighbor-joining method as derived from analysis of the 16S rRNA gene sequences showed close relationship to Salmonella Paratyphi strain FB0015 16S ribosoma RNA gene partial sequence to our Salmonella Paratyphi isolates. The detection of 3.5% prevalence rate of Salmonella serovar from feces of laying poultry birds my serve as potential source of transmission of this pathogen to human through chicken meat, egg or use of poultry dropping as manure in crop or vegetable production

Characterization of colonizing Staphylococcus aureus isolated from surgical wards' patients in a Nigerian university hospital.

In contrast to developed countries, only limited data on the prevalence, resistance and clonal structure of Staphylococcus aureus are available for African countries. Since S. aureus carriage is a risk factor for postoperative wound infection, patients who had been hospitalized in surgical wards in a Nigerian University Teaching Hospital were screened for S. aureus carriage. All S. aureus isolates were genotyped (spa, agr) and assigned to multilocus sequence types (MLST). Species affiliation, methicillin-resistance, and the possession of pyrogenic toxin superantigens (PTSAg), exfoliative toxins (ETs) and Panton-Valentine Leukocidin (PVL) were analyzed. Of 192 patients screened, the S. aureus carrier rate was 31.8 % (n = 61). Of these isolates, 7 (11.5%) were methicillin-resistant (MRSA). The isolates comprised 24 spa types. The most frequent spa types were t064, t084, t311, and t1931, while the most prevalent MLST clonal complexes were CC5 and CC15. The most frequent PTSAg genes detected were seg/sei (41.0%) followed by seb (29.5%), sea (19.7%), seh (14.7%) and sec (11.5). The difference between the possession of classical and newly described PTSAg genes was not significant (63.9% versus 59.0% respectively; P = 0.602). PVL encoding genes were found in 39.3% isolates. All MRSA isolates were PVL negative, SCCmec types I and VI in MLST CC 5 and CC 30, respectively. Typing of the accessory gene regulator (agr) showed the following distribution: agr group 1 (n = 20), group II (n = 17), group III (n = 14) and group IV (n = 10). Compared to European data, enterotoxin gene seb and PVL-encoding genes were more prevalent in Nigerian methicillin-susceptible S. aureus isolates, which may therefore act as potential reservoir for PVL and PTSAg genes

Results of testing 61 <i>S. aureus</i> isolates for staphylococcal PTSAg and ET genes by multiplex PCR.

1<p><i>sea</i>, staphylococcal enterotoxin A gene; <i>seb</i>, staphylococcal enterotoxin B gene; <i>sec</i>, staphylococcal enterotoxin C gene; <i>sed</i>, staphylococcal enterotoxin D gene; <i>see</i>, staphylococcal enterotoxin E gene; <i>tst</i>, toxin shock toxin gene; <i>seg-sei</i>, staphylococcal enterotoxin G and staphylococcal enterotoxin I genes; <i>seh</i>, staphylococcal enterotoxin H gene; <i>sej</i>, staphylococcal enterotoxin J gene; <i>eta</i>, exfoliative toxin A gene; <i>etb</i>, exfoliative toxin B gene; <i>etd</i>, exfoliative toxin D gene; <i>luk</i>S-PV and <i>luk</i>F-PV, Panton-Valentine leukocidin genes; <i>hlg</i>, gamma-hemolysin gene.</p

Characteristics of nasal and cutaneous <i>S. aureus</i> isolates.

1<p><i>spa</i>, staphylococcal protein A gene; <i>spa</i>CC, <i>spa</i> clonal complex inferred by BURP analysis; n, indicates number of isolates with similar identity for all characteristics tested;</p>2<p>MLST, multilocus sequence typing; CC, clonal complex; ST, sequence type;</p>3<p>PVL, Panton-Valentine leukocidin; pos., positive; neg., negative;</p>4<p>PTSAg/ET gene profile, pyrogenic toxin superantigen gene/exfoliative toxin gene profile; -, no PTSAg/ET gene detected;</p>5<p><i>agr</i>, accessory gene regulator type;</p>6<p>MSSA, methicillin-susceptible <i>S. aureus</i>; MRSA, methicillin-resistant <i>S. aureus</i>;</p>7<p>ND, not done; NT, not type able.</p

Characteristics of the surgical patient cohort studied.

1<p>Data are no.(%) of participants unless otherwise indicated.</p