PdamT13P_Pst1.fq

Pocillopora damicornis - Type 1/3 Het - Panama - Digested with Pst1, single-end RADSe

PdamT1P_Pst1

Pocillopora damicornis - Type 1 - Panama - Digested with Pst1, single-end RADSeq

PdamT3P2GP_Pst1.fq

Pocillopora damicornis - Type 3 - Panama, Gulf of Panama - Digested with Pst1, single-end RADSe

PdamT5JA_Pst1.fq

Pocillopora damicornis - Type 5 - Japan - Digested with Pst1, single-end RADSe

PeydT1P_Pst1.fq

Pocillopora eydouxi - Type 1 - Panama - Digested with Pst1, single-end RADSe

PdamT5TU_Pst1.fq

Pocillopora damicornis - Type 5 - French Polynesia, Tuamotus - Digested with Pst1, single-end RADSe

P2-loci alignment

All loci that were recovered from at least two samples were compiled in the extensive ‘P2’ dataset, which was used for all analyses, unless stated otherwise

PeleT1P_Pst1.fq

Pocillopora elegans - Type 1 - Panama - Digested with Pst1, single-end RADSe

P8-loci alignment

Loci that were found in all 8 samples were assembled in the more conservative ‘P8’ dataset, which was used to calculate pairwise population genetic metrics (e.g. heterozygosity, private alleles, pairwise distances) and to verify and support P2 results