Cluster Turbulence: Simulation Insights

Cluster media are dynamical, not static; observational evidence suggests they are turbulent. High-resolution simulations of the intracluster media (ICMs) and of idealized, similar media help us understand the complex physics and astrophysics involved. We present a brief overview of the physics behind ICM turbulence and outline the processes that control its development. High-resolution, compressible, isothermal MHD simulations are used to illustrate important dynamical properties of turbulence that develops in media with initially very weak magnetic fields. The simulations follow the growth of magnetic fields and reproduce the characteristics of turbulence. These results are also compared with full cluster simulations that have examined the properties of ICM turbulence.Comment: 7 pages, 2 figures. To appear the proceedings of the conference "Non-thermal Phenomena in Colliding Galaxy Clusters" (Nice, 15-18 November, 2010), Memorie della Societa Astronomica Italiana, vol 82, n

Clustering Phase Transitions and Hysteresis: Pitfalls in Constructing Network Ensembles

Ensembles of networks are used as null models in many applications. However, simple null models often show much less clustering than their real-world counterparts. In this paper, we study a model where clustering is enhanced by means of a fugacity term as in the Strauss (or "triangle") model, but where the degree sequence is strictly preserved -- thus maintaining the quenched heterogeneity of nodes found in the original degree sequence. Similar models had been proposed previously in [R. Milo et al., Science 298, 824 (2002)]. We find that our model exhibits phase transitions as the fugacity is changed. For regular graphs (identical degrees for all nodes) with degree k > 2 we find a single first order transition. For all non-regular networks that we studied (including Erdos - Renyi and scale-free networks) we find multiple jumps resembling first order transitions, together with strong hysteresis. The latter transitions are driven by the sudden emergence of "cluster cores": groups of highly interconnected nodes with higher than average degrees. To study these cluster cores visually, we introduce q-clique adjacency plots. We find that these cluster cores constitute distinct communities which emerge spontaneously from the triangle generating process. Finally, we point out that cluster cores produce pitfalls when using the present (and similar) models as null models for strongly clustered networks, due to the very strong hysteresis which effectively leads to broken ergodicity on realistic time scales.Comment: 13 pages, 11 figure

Impact of low intensity summer rainfall on E. coli-discharge event dynamics with reference to sample acquisition and storage

Understanding the role of different rainfall scenarios on faecal indicator organism (FIO) dynamics under variable field conditions is important to strengthen the evidence base on which regulators and land managers can base informed decisions regarding diffuse microbial pollution risks. We sought to investigate the impact of low intensity summer rainfall on Escherichia coli-discharge (Q) patterns at the headwater catchment scale in order to provide new empirical data on FIO concentrations observed during baseflow conditions. In addition, we evaluated the potential impact of using automatic samplers to collect and store freshwater samples for subsequent microbial analysis during summer storm sampling campaigns. The temporal variation of E. coli concentrations with Q was captured during six events throughout a relatively dry summer in central Scotland. The relationship between E. coli concentration and Q was complex with no discernible patterns of cell emergence with Q that were repeated across all events. On several occasions, an order of magnitude increase in E. coli concentrations occurred even with slight increases in Q, but responses were not consistent and highlighted the challenges of attempting to characterise temporal responses of E. coli concentrations relative to Q during low intensity rainfall. Cross-comparison of E. coli concentrations determined in water samples using simultaneous manual grab and automated sample collection was undertaken with no difference in concentrations observed between methods. However, the duration of sample storage within the autosampler unit was found to be more problematic in terms of impacting on the representativeness of microbial water quality, with unrefrigerated autosamplers exhibiting significantly different concentrations of E. coli relative to initial samples after 12-h storage. The findings from this study provide important empirical contributions to the growing evidence base in the field of catchment microbial dynamics

Evaluation of a fecal shedding test to detect badger social groups infected with Mycobacterium bovis

Bovine Tuberculosis (bTB) is an economically important disease affecting the cattle industry in England and Wales. bTB, caused by Mycobacterium bovis, also causes disease in the Eurasian badger (Meles meles), a secondary maintenance host. Disease transmission between these two species is bidirectional. Infected badgers shed M. bovis in their faeces. The UK Animal and Plant Health Agency (APHA) organised a comparative trial to determine the performance of tests in detecting M. bovis in badger faeces for the Department for Environment, Food, and Rural Affairs (DEFRA). Here we present the performance of the existing Warwick Fast24-qPCR test, and its modified version based on a high-throughput DNA extraction method (Fast96-qPCR). We found Fast24-qPCR to have a sensitivity of 96.7% (95%CI 94.5-99%, n=244) and a specificity of 99% (95%CI 97.8-100%, n=292). Fast96-qPCR requires further optimisation. Determining the disease status of badger social groups requires multiple tests per group. Therefore to increase specificity further, we independently repeated the Fast24-qPCR test on positive samples, increasing stringency by requiring a 2nd positive result. Fast24-qPCR with repeat testing had a sensitivity of 87.3% (95%CI 83.1-91.5%, n=244), and a specificity of 100% (95%CI 100-100, n=201) on an individual sample level. At the social group level, this repeat testing gives Fast24-qPCR high herd specificity, while testing multiple samples per group provides high herd sensitivity. With Fast24-qPCR we provide a social group level test with sufficient specificity and sensitivity to monitor shedding in badgers via latrine sampling, delivering a potentially valuable tool to measure the impacts of bTB control measures

Mitsui-7, heat-treated, and nitrogen-doped multi-walled carbon nanotubes elicit genotoxicity in human lung epithelial cells.

Background: The unique physicochemical properties of multi-walled carbon nanotubes (MWCNT) have led to many industrial applications. Due to their low density and small size, MWCNT are easily aerosolized in the workplace making respiratory exposures likely in workers. The International Agency for Research on Cancer designated the pristine Mitsui-7 MWCNT (MWCNT-7) as a Group 2B carcinogen, but there was insufficient data to classify all other MWCNT. Previously, MWCNT exposed to high temperature (MWCNT-HT) or synthesized with nitrogen (MWCNT-ND) have been found to elicit attenuated toxicity; however, their genotoxic and carcinogenic potential are not known. Our aim was to measure the genotoxicity of MWCNT-7 compared to these two physicochemically-altered MWCNTs in human lung epithelial cells (BEAS-2B & SAEC). Results: Dose-dependent partitioning of individual nanotubes in the cell nuclei was observed for each MWCNT material and was greatest for MWCNT-7. Exposure to each MWCNT led to significantly increased mitotic aberrations with multi- and monopolar spindle morphologies and fragmented centrosomes. Quantitative analysis of the spindle pole demonstrated significantly increased centrosome fragmentation from 0.024-2.4 [mu]g/mL of each MWCNT. Significant aneuploidy was measured in a dose-response from each MWCNT-7, HT, and ND; the highest dose of 24 [mu]g/mL produced 67, 61, and 55%, respectively. Chromosome analysis demonstrated significantly increased centromere fragmentation and translocations from each MWCNT at each dose. Following 24 h of exposure to MWCNT-7, ND and/or HT in BEAS-2B a significant arrest in the G1/S phase in the cell cycle occurred, whereas the MWCNT-ND also induced a G2 arrest. Primary SAEC exposed for 24 h to each MWCNT elicited a significantly greater arrest in the G1 and G2 phases. However, SAEC arrested in the G1/S phase after 72 h of exposure. Lastly, a significant increase in clonal growth was observed one month after exposure to 0.024 [mu]g/mL MWCNT-HT & ND. Conclusions: Although MWCNT-HT & ND cause a lower incidence of genotoxicity, all three MWCNTs cause the same type of mitotic and chromosomal disruptions. Chromosomal fragmentation and translocations have not been observed with other nanomaterials. Because in vitro genotoxicity is correlated with in vivo genotoxic response, these studies in primary human lung cells may predict the genotoxic potency in exposed human populations

Convective-reactive proton-C12 combustion in Sakurai's object (V4334 Sagittarii) and implications for the evolution and yields from the first generations of stars

Depending on mass and metallicity as well as evolutionary phase, stars occasionally experience convective-reactive nucleosynthesis episodes. We specifically investigate the situation when nucleosynthetically unprocessed, H-rich material is convectively mixed with a He-burning zone, for example in convectively unstable shell on top of electron-degenerate cores in AGB stars, young white dwarfs or X-ray bursting neutron stars. Such episodes are frequently encountered in stellar evolution models of stars of extremely low or zero metal content [...] We focus on the convective-reactive episode in the very-late thermal pulse star Sakurai's object (V4334 Sagittarii). Asplund etal. (1999) determined the abundances of 28 elements, many of which are highly non-solar, ranging from H, He and Li all the way to Ba and La, plus the C isotopic ratio. Our simulations show that the mixing evolution according to standard, one-dimensional stellar evolution models implies neutron densities in the He that are too low to obtain a significant neutron capture nucleosynthesis on the heavy elements. We have carried out 3D hydrodynamic He-shell flash convection [...] we assume that the ingestion process of H into the He-shell convection zone leads only after some delay time to a sufficient entropy barrier that splits the convection zone [...] we obtain significantly higher neutron densities (~few 10^15 1/cm^3) and reproduce the key observed abundance trends found in Sakurai's object. These include an overproduction of Rb, Sr and Y by about 2 orders of magnitude higher than the overproduction of Ba and La. Such a peculiar nucleosynthesis signature is impossible to obtain with the mixing predictions in our one-dimensional stellar evolution models. [...] We determine how our results depend on uncertainties of nuclear reaction rates, for example for the C13(\alpha, n)O16 reaction.Comment: ApJ in press, this revision contains several changes that improve clarity of presentation reflecting the suggestions made by the referee; this version represents no change in substance compared to version 1; some technical material has been moved to an appendix; an additional appendix deals in more detail with the combustion time scales; this version is practically identical to the ApJ versio

New Wine in Old Bottles: A Case Study of Innovation Territories in "New World" Wine Production

This article applies the concept of "innovation territories" to explain the recent export success of the Australian Wine Industry. Recent data collected from four "New World" wine producing countries are contrasted in order to investigate "innovation territories" that in the Australian context transcend geographic and policy boundaries. The international comparison shows that these territories can be mapped and their interaction compared. A major finding from teh study is that one of the major contributors to Australia's success in gaining comparative advantage in this industry is the way local and national investments in R&D have transcended geographic and policy boundaries. Coordination driven by strong national policies is required to make this happen. This suggests that "knowledge intensive clusters" driven by national policies can be turned to advantage for regional development. The present study serves to sketch out how the idea of innovation territories might be operationalised for the purpose of future industry policy research

Performance of a non-invasive test for detecting mycobacterium bovis shedding in European badger (meles meles) populations

The incidence of Mycobacterium bovis, the causative agent of bovine tuberculosis, in cattle herds in the United Kingdom is increasing, resulting in substantial economic losses. The European badger (Meles meles) is implicated as a wildlife reservoir and is the subject of control measures aimed at reducing incidence in cattle populations. Understanding the epidemiology of M. bovis in badger populations is essential to direct control interventions and understand disease spread; however, accurate diagnosis in live animals is challenging and currently uses invasive methods. Here we present a non-invasive diagnostic procedure and sampling regime using field sampling of latrines and detection of M. bovis with qPCR, the results of which strongly correlate with the results of immunoassay testing in the field at the social group level. This method allows M. bovis infection in badger populations to be monitored without trapping and provides additional information on the quantity of bacterial DNA shed. Our approach may therefore provide valuable insights into the epidemiology of bovine tuberculosis in badger populations and inform disease control interventions