A semi-structured approach to curvilinear mesh generation around streamlined bodies

We present an approach for robust high-order mesh generation specially tailored to streamlined bodies. The method is based on a semi-sructured approach which combines the high quality of structured meshes in the near-field with the flexibility of unstructured meshes in the far-field. We utilise medial axis technology to robustly partition the near-field into blocks which can be meshed coarsely with a linear swept mesher. A high-order mesh of the near-field is then generated and split using an isoparametric approach which allows us to obtain highly stretched elements aligned with the flow field. Special treatment of the partition is performed on the wing root juntion and the trailing edge --- into the wake --- to obtain an H-type mesh configuration with anisotropic hexahedra ideal for the strong shear of high Reynolds number simulations. We then proceed to discretise the far-field using traditional robust tetrahedral meshing tools. This workflow is made possible by two sets of tools: CADfix, focused on CAD system, the block partitioning of the near-field and the generation of a linear mesh; and NekMesh, focused on the curving of the high-order mesh and the generation of highly-stretched boundary layer elements. We demonstrate this approach on a NACA0012 wing attached to a wall and show that a gap between the wake partition and the wall can be inserted to remove the dependency of the partitioning procedure on the local geometry.Comment: Preprint accepted to the 2019 AIAA Aerospace Sciences Meetin

Discovery and Characterization of 3000+ Main-Sequence Binaries from APOGEE Spectra

We develop a data-driven spectral model for identifying and characterizing spatially unresolved multiple-star systems and apply it to APOGEE DR13 spectra of main-sequence stars. Binaries and triples are identified as targets whose spectra can be significantly better fit by a superposition of two or three model spectra, drawn from the same isochrone, than any single-star model. From an initial sample of $\sim$20,000 main-sequence targets, we identify $\sim$2,500 binaries in which both the primary and secondary star contribute detectably to the spectrum, simultaneously fitting for the velocities and stellar parameters of both components. We additionally identify and fit $\sim$200 triple systems, as well as $\sim$700 velocity-variable systems in which the secondary does not contribute detectably to the spectrum. Our model simplifies the process of simultaneously fitting single- or multi-epoch spectra with composite models and does not depend on a velocity offset between the two components of a binary, making it sensitive to traditionally undetectable systems with periods of hundreds or thousands of years. In agreement with conventional expectations, almost all the spectrally-identified binaries with measured parallaxes fall above the main sequence in the color-magnitude diagram. We find excellent agreement between spectrally and dynamically inferred mass ratios for the $\sim$600 binaries in which a dynamical mass ratio can be measured from multi-epoch radial velocities. We obtain full orbital solutions for 64 systems, including 14 close binaries within hierarchical triples. We make available catalogs of stellar parameters, abundances, mass ratios, and orbital parameters.Comment: Accepted to MNRAS with minor revisions since v1. 19 pages, 12 figures, plus Appendice

Clinical Features and Serum Biomarkers in HIV Immune Reconstitution Inflammatory Syndrome after Cryptococcal Meningitis: A Prospective Cohort Study

David Boulware and colleagues investigate clinical features in a prospective cohort with AIDS and recent cryptococcal meningitis after initiation of antiretroviral therapy to identify biomarkers for prediction and diagnosis of CM-IRIS (cryptococcal meninigitis-related immune reconstitution inflammatory syndrome)

Sodium and Oxygen Abundances in the Open Cluster NGC 6791 from APOGEE H-Band Spectroscopy

The open cluster NGC 6791 is among the oldest, most massive and metal-rich open clusters in the Galaxy. High-resolution $H$-band spectra from the Apache Point Observatory Galactic Evolution Experiment (APOGEE) of 11 red giants in NGC 6791 are analyzed for their chemical abundances of iron, oxygen, and sodium. The abundances of these three elements are found to be homogeneous (with abundance dispersions at the level of $\sim$ 0.05 - 0.07 dex) in these cluster red giants, which span much of the red-giant branch (T$_{\rm eff}$ $\sim$ 3500K - 4600K), and include two red-clump giants. From the infrared spectra, this cluster is confirmed to be among the most metal-rich clusters in the Galaxy ($$ = 0.34 $\pm$ 0.06), and is found to have a roughly solar value of [O/Fe] and slightly enhanced [Na/Fe]. Non-LTE calculations for the studied Na I lines in the APOGEE spectral region ($\lambda$16373.86\AA\ and $\lambda$16388.85\AA) indicate only small departures from LTE ($\leq$ 0.04 dex) for the parameter range and metallicity of the studied stars. The previously reported double population of cluster members with different Na abundances is not found among the studied sample.Comment: Accepted for publication at ApJ Letter

18 Sco: A solar twin rich in refractory and neutron-capture elements. Implications for chemical tagging

We study with unprecedented detail the chemical composition and stellar parameters of the solar twin 18 Sco in a strictly differential sense relative to the Sun. Our study is mainly based on high-resolution (R ∼ 110,000), high signal-to-noise ratio (80

Catching a Moving Target: Comparative Modeling of Flaviviral NS2B-NS3 Reveals Small Molecule Zika Protease Inhibitors

The pivotal role of viral proteases in virus replication has already been successfully exploited in several antiviral drug design campaigns. However, no efficient antivirals are currently available against flaviviral infections. In this study, we present lead-like small molecule inhibitors of the Zika Virus (ZIKV) NS2B-NS3 protease. Since only few nonpeptide competitive ligands are known, we take advantage of the high structural similarity with the West Nile Virus (WNV) NS2B-NS3 protease. A comparative modeling approach involving our in-house software PyRod was employed to systematically analyze the binding sites and develop molecular dynamics-based 3D pharmacophores for virtual screening. The identified compounds were biochemically characterized revealing low micromolar affinity for both ZIKV and WNV proteases. Their lead-like properties together with rationalized binding modes represent valuable starting points for future lead optimization. Since the NS2B-NS3 protease is highly conserved among flaviviruses, these compounds may also drive the development of pan-flaviviral antiviral drugs.C.N. thanks the Australian Research Council for a Discovery Early Career Research Award (DE190100015)

High Precision Abundances of the Old Solar Twin HIP 102152: Insights on Li Depletion from the Oldest Sun

We present the first detailed chemical abundance analysis of the old 8.2 Gyr solar twin, HIP 102152. We derive differential abundances of 21 elements relative to the Sun with precisions as high as 0.004 dex ($\lesssim$1%), using ultra high-resolution (R = 110,000), high S/N UVES spectra obtained on the 8.2-m Very Large Telescope. Our determined metallicity of HIP 102152 is [Fe/H] = -0.013 $\pm$ 0.004. The atmospheric parameters of the star were determined to be 54 K cooler than the Sun, 0.09 dex lower in surface gravity, and a microturbulence identical to our derived solar value. Elemental abundance ratios examined vs. dust condensation temperature reveal a solar abundance pattern for this star, in contrast to most solar twins. The abundance pattern of HIP 02152 appears to be the most similar to solar of any known solar twin. Abundances of the younger, 2.9 Gyr solar twin, 18 Sco, were also determined from UVES spectra to serve as a comparison for HIP 102152. The solar chemical pattern of HIP 102152 makes it a potential candidate to host terrestrial planets, which is reinforced by the lack of giant planets in its terrestrial planet region. The following non-local thermodynamic equilibrium Li abundances were obtained for HIP 102152, 18 Sco, and the Sun: log $\epsilon$ (Li) = 0.48 $\pm$ 0.07, 1.62 $\pm$ 0.02, and 1.07 $\pm$ 0.02, respectively. The Li abundance of HIP 102152 is the lowest reported to date for a solar twin, and allows us to consider an emerging, tightly constrained Li-age trend for solar twin stars.Comment: Published in ApJL. 22 pages, 4 figures, and 1 tabl

High precision abundances of the old solar twin HIP 102152: Insights on Li depletion from the oldest sun

We present the first detailed chemical abundance analysis of the old 8.2 Gyr solar twin, HIP 102152. We derive differential abundances of 21 elements relative to the Sun with precisions as high as 0.004 dex (≲1%), using ultra high-resolution (R = 110,0

Negative cell cycle regulation by Calcineurin is necessary for proper beta cell regeneration in zebrafish

peer reviewedStimulation of pancreatic beta cell regeneration could be a therapeutic lead to treat diabetes. Unlike humans, the zebrafish can efficiently regenerate beta cells, notably from ductal pancreatic progenitors. To gain insight into the molecular pathways involved in this process, we established the transcriptomic profile of the ductal cells after beta cell ablation in the adult zebrafish. These data highlighted the protein phosphatase calcineurin as a new potential modulator of beta cell regeneration. We showed that calcineurin overexpression abolished the regenerative response, leading to glycemia dysregulation. On the opposite, calcineurin inhibition increased ductal cell proliferation and subsequent beta cell regeneration. Interestingly, the enhanced proliferation of the progenitors was paradoxically coupled with their exhaustion. This suggests that the proliferating progenitors are next entering in differentiation. Calcineurin appears as a guardian which prevents an excessive progenitor proliferation to preserve the pool of progenitors. Altogether, our findings reveal calcineurin as a key player in the balance between proliferation and differentiation to enable a proper beta cell regeneration