In vivo co-localization of enzymes on RNA scaffolds increases metabolic production in a geometrically dependent manner

Co-localization of biochemical processes plays a key role in the directional control of metabolic fluxes toward specific products in cells. Here, we employ in vivo scaffolds made of RNA that can bind engineered proteins fused to specific RNA binding domains. This allows proteins to be co-localized on RNA scaffolds inside living Escherichia coli. We assembled a library of eight aptamers and corresponding RNA binding domains fused to partial fragments of fluorescent proteins. New scaffold designs could co-localize split green fluorescent protein fragments to produce activity as measured by cell-based fluorescence. The scaffolds consisted of either single bivalent RNAs or RNAs designed to polymerize in one or two dimensions. The new scaffolds were used to increase metabolic output from a two-enzyme pentadecane production pathway that contains a fatty aldehyde intermediate, as well as three and four enzymes in the succinate production pathway. Pentadecane synthesis depended on the geometry of enzymes on the scaffold, as determined through systematic reorientation of the acyl-ACP reductase fusion by rotation via addition of base pairs to its cognate RNA aptamer. Together, these data suggest that intra-cellular scaffolding of enzymatic reactions may enhance the direct channeling of a variety of substrates

Assessment of the Reconstructed Aerodynamics of the Mars Science Laboratory Entry Vehicle

On August 5, 2012, the Mars Science Laboratory entry vehicle successfully entered Mars atmosphere, flying a guided entry until parachute deploy. The Curiosity rover landed safely in Gale crater upon completion of the Entry Descent and Landing sequence. This paper compares the aerodynamics of the entry capsule extracted from onboard flight data, including Inertial Measurement Unit (IMU) accelerometer and rate gyro information, and heatshield surface pressure measurements. From the onboard data, static force and moment data has been extracted. This data is compared to preflight predictions. The information collected by MSL represents the most complete set of information collected during Mars entry to date. It allows the separation of aerodynamic performance from atmospheric conditions. The comparisons show the MSL aerodynamic characteristics have been identified and resolved to an accuracy better than the aerodynamic database uncertainties used in preflight simulations. A number of small anomalies have been identified and are discussed. This data will help revise aerodynamic databases for future missions and will guide computational fluid dynamics (CFD) development to improved prediction codes

Dense, low-power sensor network for three-dimensional thermal characterization of large-scale atria spaces

We describe the design and implementation of a dense, low-power wireless sensor network for fine-grained three-dimensional thermal characterization of a large open indoor space. To better understand the airflow dynamics and ensuing energy efficiency potential of this type of modern architectural design, we developed a sustainable wireless mesh network consisting of 50 sensors hung on an array of thin cables in a 210 m[superscript 2], 14.2 m tall atrium for real-time temperature and humidity monitoring. The goal is to create compact wireless measurement sensor blocks for dense coverage in the building. We demonstrate the implementation through a preliminary analysis, which includes the evaluation of temperature distribution discrepancies with computer-simulated results and data taken during natural ventilation to illustrate the nontrivial, well-mixed temperatures observed during the studies.Massachusetts Institute of Technology. Media LaboratorySchneider Electric (Firm

Publisher Correction: Copper adparticle enabled selective electrosynthesis of n-propanol.

An amendment to this paper has been published and can be accessed via a link at the top of the paper

Tillage and Fertilizer Management Effects on Soil-Atmospheric Exchanges of Methane and Nitrous Oxide in a Corn Production System

Land application of poultry litter (PL) presents an opportunity to improve soil productivity and disposal of poultry waste. We investigated methane (CH4) and nitrous oxide (N2O) emissions from agricultural soil receiving PL and ammonium nitrate (AN) fertilizers using surface (SA), soil incorporation (SI), and subsurface band (BA) application methods in conventional (CT) and no-tillage (NT) systems on a Decatur silt loam soil in North Alabama. Plots under CT and NT were sinks of CH4 in spring, summer, and fall. In winter, the plots had net emissions of 3.32 and 4.24 g CH4 ha-1 day-1 in CT and NT systems, respectively. Plots which received AN were net emitters of CH4 and N2O, whereas plots which received PL were net sinks of CH4. Plots which received PL using SA or SI methods were net emitters of N2O, whereas under PL using BA application, the plots were net sinks of N2O. Our study indicates that using subsurface band application of PL was the most promising environmentally sustainable poultry waste application method for reducing CH4 and N2O emissions from agricultural soil in NT and CT corn production systems on the Decatur soil in north Alabama

Aerocapture Systems Analysis for a Titan Mission

Performance projections for aerocapture show a vehicle mass savings of between 40 and 80%, dependent on destination, for an aerocapture vehicle compared to an all-propulsive chemical vehicle. In addition aerocapture is applicable to multiple planetary exploration destinations of interest to NASA. The 2001 NASA In-Space Propulsion Program (ISP) technology prioritization effort identified aerocapture as one of the top three propulsion technologies for solar system exploration missions. An additional finding was that aerocapture needed a better system definition and that supporting technology gaps needed to be identified. Consequently, the ISP program sponsored an aerocapture systems analysis effort that was completed in 2002. The focus of the effort was on aerocapture at Titan with a rigid aeroshell system. Titan was selected as the initial destination for the study due to potential interest in a follow-on mission to Cassini/Huygens. Aerocapture is feasible, and the performance is adequate, for the Titan mission and it can deliver 2.4 times more mass to Titan than an all-propulsive system for the same launch vehicle

Photosynthetic and Respiratory Responses of Two Bog Shrub Species to Whole Ecosystem Warming and Elevated CO2 at the Boreal-Temperate Ecotone

Peatlands within the boreal-temperate ecotone contain the majority of terrestrial carbon in this region, and there is concern over the fate of such carbon stores in the face of global environmental changes. The Spruce and Peatland Response Under Changing Environments (SPRUCE) facility aims to advance the understanding of how such peatlands may respond to such changes, using a combination of whole ecosystem warming (WEW; +0, 2.25, 4.5, 6.75, and 9◦C) and elevated CO2 (eCO2; +500 ppm) treatments in an intact bog ecosystem. We examined photosynthetic and respiration responses in leaves of two ericaceous shrub species–leatherleaf [Chamaedaphne calyculata (L.) Moench] and bog Labrador tea [Rhododendron groenlandicum (Oeder) Kron & Judd]–to the first year of combined eCO2 and WEW treatments at SPRUCE. We surveyed the leaf N content per area (Narea), net photosynthesis (AST ) and respiration (RD25) at 25◦C and 400 ppm CO2 and net photosynthesis at mean growing conditions (AGR) of newly emerged, mature and overwintered leaves. We also measured leaf non-structural carbohydrate content (NSC) in mature leaves. The effects of WEW and eCO2 varied by season and species, highlighting the need to accommodate such variability in modeling this system. In mature leaves, we did not observe a response to either treatment of AST or RD25 in R. groenlandicum, but we did observe a 50% decrease in AST of C. calyculata with eCO2. In mature leaves under eCO2, neither species had increased AGR and both had increases in NSC, indicating acclimation of photosynthesis to eCO2 may be related to source-sink imbalances of carbohydrates. Thus, productivity gains of shrubs under eCO2 may be lower than previously predicted for this site by models not accounting for such acclimation. In newly emerged leaves, AST increased with WEW in R. groenlandicum, but not C. calyculata. Overwintered leaves exhibited a decrease in RD25 for R. groenlandicum and in AST for C. calyculata with increasing WEW, as well as an increase of AGR with eCO2 in both species. Responses in newly emerged and overwintered leaves may reflect physiological acclimation or phenological changes in response to treatments

Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design.

Accelerating cures for children with cancer remains an immediate challenge as a result of extensive oncogenic heterogeneity between and within histologies, distinct molecular mechanisms evolving between diagnosis and relapsed disease, and limited therapeutic options. To systematically prioritize and rationally test novel agents in preclinical murine models, researchers within the Pediatric Preclinical Testing Consortium are continuously developing patient-derived xenografts (PDXs)-many of which are refractory to current standard-of-care treatments-from high-risk childhood cancers. Here, we genomically characterize 261 PDX models from 37 unique pediatric cancers; demonstrate faithful recapitulation of histologies and subtypes; and refine our understanding of relapsed disease. In addition, we use expression signatures to classify tumors for TP53 and NF1 pathway inactivation. We anticipate that these data will serve as a resource for pediatric oncology drug development and will guide rational clinical trial design for children with cancer