12 research outputs found
Electronic states of myricetin:UV-Vis polarization spectroscopy and quantum chemical calculations
Free volume in polymer systems
Slobodni volumen u polimerima ima važnu ulogu u razumijevanju mnogih svojstava kao što su, primjerice, mehanička i električna svojstva te difuzija malih molekula i plinova. Razvoj novih metoda posljednjih je godina poboljšao određivanje mikrostrukture slobodnog volumena, veličinu i oblik šupljina te njihovu raspodjelu. U radu su opisane najčešće primjenjivane teorije slobodnog volumena i dan je pregled novijih rezultata primjene metoda probe: elektronske spinske rezonancije, ESR, metoda spinske probe/oznake, metode fluorescencije te najnovije metode spektroskopije pozitronske anihilacije, PALS. Razmotrene su prednosti i ograničenja opisanih metoda u određivanju slobodnog volumena. Analiza slobodnog volumena povezana sa svojstvima polimernih materijala omogućuje da se tijekom priprave polimera poboljšaju ili mijenjaju određena svojstva.The free volume of polymers plays an important role in the understanding of many characteristic properties such as mechanical and electrical properties and transport of small molecules and gases. The development of new methods in recent years has improved polymer characterization of free volume: the size and the shape of holes and free volume distribution. The paper reviews some of the most frequently used free volume theories and recent results of the applications of probe methods: electron spin resonance, ESR, - spin probe/label method, fluorescence method and positron annihilation spectroscopy, PALS. The scope and limitations of the reviewed methods in the study of free volume are described. The analysis of free volume correlated with the polymer properties offers a possibility to control and improve polymer characteristics during the polymer preparation and processing
Unraveling the weak hydrogen bonds of ethynylpyridines and ethynylbenzene with trimethylphosphate - A combined FT-Raman spectroscopic and quantum-chemical study
The interplay of secondary hydrogen bonds of 2- and 3-ethynylpyridine or ethynylbenzene with trimethylphosphate in tetrachloroethene was elucidated using FT-Raman spectroscopy and MP2/6-311 + G(d,p) calculations. The direct participation of C C moiety in the complex formation was demonstrated by the change in the shape of the C C stretching band and further characterized in terms of vibrational dephasing of C C stretching. With this aim, the complex band pattern in frequency domain was decomposed using analytical function, introduced by Egelstaff and Schofield and further disseminated by Kirillov, with analytical counterpart in the time domain. The amplitude of frequency fluctuations (M-2), frequency modulation time (T-omega) and vibrational dephasing time (T-v) were determined for both unassociated (C C) and associated (C C center dot center dot center dot) ethynyl moieties of 2- and 3-ethynylpyridine and ethynylbenzene. The differences in the dynamical parameters indicate broader distribution of the frequency fluctuations for C C center dot center dot center dot moiety (M-2 similar to 1-2 ps(-2)) than for C C moiety (M-2 approximate to 0.5 ps(-2)), while the average time between perturbative events, as well as the time needed for the phase being completely lost, were shorter for C C center dot center dot center dot (T-omega similar to 0.2-0.7 ps, T-nu approximate to 1ps) than for C C moiety (T-omega similar to.4-1.7 ps, T-v approximate to ps). The shorter T-omega, for moiety of 2-ethynylpyridine (T-omega approximate to .23 ps), in comparison with analogous quantity of 3-ethynylpyridine and ethynylbenzene (T-omega approximate to 0.6 and 0.68 ps), is attributed to more frequent hindering of the C C center dot center dot center dot HCH2 hydrogen bond by spatially close N-atom which competes for H-atom of CH3 group thus making the N center dot center dot center dot HCH2 hydrogen bond, as predicted by MP2 calculations. Additionally, a hydrogen bond between ortho H-atom of 3-ethynylpyridine and P-O(CH3) group of trimethylphosphate is suggested from experimental FT-Raman spectra as well and also computationally verified. (C) 2016 Elsevier B.V. All rights reserved
Intramolecular hydrogen bonding in myricetin and myricitrin:Quantum chemical calculations and vibrational spectroscopy
Reaction Mechanism of Covalent Modification of Phosphatidylethanolamine Lipids by Reactive Aldehydes 4‑Hydroxy-2-nonenal and 4‑Oxo-2-nonenal
4-Hydroxy-2-nonenal
(HNE) and 4-oxo-2-nonenal (ONE) are biologically
important reactive aldehydes formed during oxidative stress in phospholipid
bilayers. They are highly reactive species due to presence of several
reaction centers and can react with amino acids in peptides and proteins,
as well as phosphoethanolamine (PE) lipids, thus modifying their biological
activity. The aim of this work is to study in a molecular detail the
reactivity of HNE and ONE toward PE lipids in a simplified system
containing only lipids and reactive aldehydes in dichloromethane as
an inert solvent. We use a combination of quantum chemical calculations, <sup>1</sup>H NMR measurements, FT-IR spectroscopy, and mass spectrometry
experiments and show that for both reactive aldehydes two types of
chemical reactions are possible: formation of Michael adducts and
Schiff bases. In the case of HNE, an initially formed Michael adduct
can also undergo an additional cyclization step to a hemiacetal derivative,
whereas no cyclization occurs in the case of ONE and a Michael adduct
is identified. A Schiff base product initially formed when HNE is
added to PE lipid can also further cyclize to a pyrrole derivative
in contrast to ONE, where only a Schiff base product is isolated.
The suggested reaction mechanism by quantum-chemical calculations
is in a qualitative agreement with experimental yields of isolated
products and is also additionally investigated by <sup>1</sup>H NMR
measurements, FT-IR spectroscopy, and mass spectrometry experiments
Unraveling the weak hydrogen bonds of ethynylpyridines and ethynylbenzene with trimethylphosphate — A combined FT-Raman spectroscopic and quantum-chemical study
Ligand-Dependent Nanoparticle Clustering within Lipid Membranes Induced by Surrounding Medium
The
interactions between hydrophobic or semihydrophobic gold and
silver nanoparticles (NPs) and a dimyristoylphosphatidylcholine
(DMPC) bilayer as a model cell membrane in two ionic solutions result
in the structural reorganization within the bilayer manifested as
locally increased nanomechanical compaction in the vicinity of NP
clusters as well as changed overall thermotropic properties. The effects
of NP surface charge and hydrophobicity were examined using AFM imaging,
force spectroscopy and IR spectroscopy. The NP clustering occurred
during hydration process of dry films containing both the DMPC molecules
and the NPs by the mechanism in which the number of bilayer deformations
was reduced by NP clustering. The force spectroscopy showed increased
bilayer density around (semi)hydrophobic NP clusters and thus locally
increased lateral compaction of the bilayer. The strengthening effect
was observed for both the silver and the gold NPs in a high ionic
strength solution such as seawater, while it was absent under physiological
conditions. The local lipid rearrangement induces the long-range lipid
reorganization resulting in the bilayer phase transition shifting
toward lower or higher temperatures depending on the solution ionic
strength (at the most by −1.0 °C in phosphate buffered
saline and at the most by +0.5 °C in seawater)
High Influence of Potassium Bromide on Thermal Decomposition of Ammonia Borane<sup>†</sup>
The
present paper presents a thorough experimental investigation
of mechanistic pathways of thermal decomposition of ammonia borane
(AB) and its mixture with KBr. A comparative detection and temperature-dependent <i>in situ</i> monitoring of the decomposition products was done
by use of temperature-dependent infrared (IR) spectroscopy of both
solid (in transmission through KBr pellets and ATR mode) and gaseous
products, thermogravimetry (TG) and evolved gas analysis mass spectroscopy
(EGA–MS). This enables discrimination of the processes occurring
in the bulk from those in the near-surface level. For the first time,
a high influence of the KBr matrix on AB decomposition was found and
thoroughly investigated. Although KBr does not change the chemical
and physical identity of AB at ambient conditions, it dramatically
affects its thermal decomposition pathway. It is found that the presence
of KBr not only favors the production of diammoniate of diborane in
the induction phase, but also enables an efficient catalysis of AB
decomposition by NH<sub>4</sub><sup>+</sup> ions, present at the KBr–AB interface, which leads
to suppression of emission of unwanted gaseous side products other
than NH<sub>3</sub>. IR spectroscopy was also used to shed a light
on the molecular background of the frequently observed, but never
investigated increase of the mass of decomposition products