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Individual bam files used in population genomic analyses

The data consist of MIseq amplicon reads mapped to the file available in 'A2 reference for read mapping'

Hatton reference genome assembly

This is the reference assembly for the Hatton (SI) population of L. alabamica

Hatton variants in A2 read mapping reference

This file is a version of the A2 read mapping reference file with the Hatton SNP variants inserted. This file served as our ancestral sequence for polarizing the SFS

A2 reference for read mapping

This reference consists of 2 fasta entries: s_region and unlinked. The s_region is concatenated sequence from all S-linked contigs/scaffolds from the reference assembly (A2 reference genome assembly) for which we had amplicon data. The same is true for the unlinked entry, except these contigs/scaffolds were not physically linked to the S-locu

Data for estimation of somatic mutation

Proportion of flowers setting fruit from autonomously-pollinated inflorescences (Wa), and geitonogamously-pollinated inflorescences (Wg). Also included is the autogamy depression measure. These measurements were paired as described in the article. Clone number refers to a specific clone. There were several Wa and Wg measurements for each clone. The measure D is the autogamy depression measurement, calculated for each paired autogamous and geitonogamous inflorescence cross

PathAnalysisData

Data used in path analysis and figure 3 & 4 of Fulton et al. Column codes are in the readme file. Data set is from 24 fields in Neguac in each of two years

Mean fruitset of open and supplementally pollinated shoots

Mean field level fruit set, sd and n for 78 blueberry fields with pollination treatment. Column codes are: Year (2009,2010,2011),Location (Neguac or St. Stephen), Field (unique field identifier, Honey (honey bee present or absent),Bumble (bumble bee present or absent), Leaf (leaf cutter bee present or absent), CFruitset%.mn (mean % fruitset of open pollinated shoots for each field), CFruitset.sd (standard deviation fruitset of open pollinated shoots for each field) , CFruitset.n(number of open pollinated shoots per field), SFruitset%.mn (mean % fruitset of supplementally pollinated shoots for each field),SFruitset.sd (standard deviation fruitset of open pollinated shoots for each field), SFruitset.n (number of supplementally pollinated shoots per field

BlueberrySeedsetAllYearsAllLocations

Mean field level fruit set, sd and n for 78 blueberry fields with pollination treatment. Column codes are: Year (2009, 2010, 2011), Location (Neguac or St. Stephen), Field (unique field identifiy), Honey (present or absent), Bumble (present or absent), Leaf (present or absent), CSeedset%.mn (mean % seedset of open pollinated shoots for each field), CSeedset.sd (standard deviation of seedset of open pollinated shoots for each field) , CSeedset.n(number of open pollinated shoots per field that seeds were counted for), SSeedset%.mn (mean % seedset of supplementally pollinated shoots for each field),SSeedset.sd (standard deviation seedet of open pollinated shoots for each field), SSeedset.n (number of supplementally pollinated shoots per field

beedistance2010

Data from figure 5 Fulton et al. Column codes are: Individual (unique bee identifier) Date (date)Site (field identifier)Bee (species)Flower Number (number of flowers visited by each individual) Inflorescence (number of inflorescences visited) Distance(cm