Soil depth and geographic distance modulate bacterial β-diversity in deep soil profiles throughout the U.S. Corn Belt

Understanding how microbial communities are shaped across spatial dimensions is of fundamental importance in microbial ecology. However, most studies on soil biogeography have focused on the topsoil microbiome, while the factors driving the subsoil microbiome distribution are largely unknown. Here we used 16S rRNA amplicon sequencing to analyse the factors underlying the bacterial β-diversity along vertical (0–240 cm of soil depth) and horizontal spatial dimensions (~500,000 km2) in the U.S. Corn Belt. With these data we tested whether the horizontal or vertical spatial variation had stronger impacts on the taxonomic (Bray-Curtis) and phylogenetic (weighted Unifrac) β-diversity. Additionally, we assessed whether the distance-decay (horizontal dimension) was greater in the topsoil (0–30 cm) or subsoil (in each 30 cm layer from 30–240 cm) using Mantel tests. The influence of geographic distance versus edaphic variables on the bacterial communities from the different soil layers was also compared. Results indicated that the phylogenetic β-diversity was impacted more by soil depth, while the taxonomic β-diversity changed more between geographic locations. The distance-decay was lower in the topsoil than in all subsoil layers analysed. Moreover, some subsoil layers were influenced more by geographic distance than any edaphic variable, including pH. Although different factors affected the topsoil and subsoil biogeography, niche-based models explained the community assembly of all soil layers. This comprehensive study contributed to elucidating important aspects of soil bacterial biogeography including the major impact of soil depth on the phylogenetic β-diversity, and the greater influence of geographic distance on subsoil than on topsoil bacterial communities in agroecosystems

Nitrate losses across 29 Iowa watersheds: Measuring long-term trends in the context of interannual variability

In the U.S. Corn Belt, annual croplands are the primary source of nitrate loading to waterways. Long periods of fallow cause most nitrate loss, but there is extreme interannual variability in the magnitude of nitrate loss due to weather. Using mean annual (2001–2018) flow-weighted nitrate-N concentration (FWNC; mg NO3––N L–1), load (kg NO3––N), and yield (kg NO3––N ha–1 cropland) for 29 watersheds, our objectives were (a) to quantify the magnitude and interannual variability of 5-yr moving average FWNC, load, and yield; (2) to estimate the probability of measuring 41% reductions in nitrate loss after isolating the effect of weather on nitrate loss by quantifying the interannual variability of nitrate loss in watersheds where there was no trend in 5-yr moving average nitrate loss (Iowa targets a 41% nitrate loss reduction from croplands); and (c) to identify factors that, in the absence of long-term trends in nitrate loss, best explain the interannual variability in nitrate loss. Averaged across all watersheds, the mean probability of measuring a statistically significant 41% reduction in FWNC across 15 yr, should it occur, was 96%. However, the probabilities of measuring 41% reductions in nitrate load and yield were only 44 and 32%. Across watersheds, soil organic matter, tile drainage, interannual variability of precipitation, and watershed area accounted for interannual variability in these nitrate loss indices. Our results have important implications for setting realistic timelines to measure nitrate loss reductions against the background of interannual weather variation and can help to target monitoring intensity across diverse watersheds.This article is published as Danalatos, Gerasimos, Calvin Wolter, Sotirios Archontoulis, and Mike Castellano. Nitrate losses across 29 Iowa watersheds: Measuring long‐term trends in the context of interannual variability. 2022. doi:10.1002/jeq2.20349. Posted with permission. This is an open access article under the terms of the Creative Commons Attribution-NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes

Soil depth and geographic distance modulate bacterial β-diversity in deep soil profiles throughout the U.S. Corn Belt

Understanding how microbial communities are shaped across spatial dimensions is of fundamental importance in microbial ecology. However, most studies on soil biogeography have focused on the topsoil microbiome, while the factors driving the subsoil microbiome distribution are largely unknown. Here we used 16S rRNA amplicon sequencing to analyse the factors underlying the bacterial β-diversity along vertical (0–240 cm of soil depth) and horizontal spatial dimensions (~500,000 km2) in the U.S. Corn Belt. With these data we tested whether the horizontal or vertical spatial variation had stronger impacts on the taxonomic (Bray-Curtis) and phylogenetic (weighted Unifrac) β-diversity. Additionally, we assessed whether the distance-decay (horizontal dimension) was greater in the topsoil (0–30 cm) or subsoil (in each 30 cm layer from 30–240 cm) using Mantel tests. The influence of geographic distance versus edaphic variables on the bacterial communities from the different soil layers was also compared. Results indicated that the phylogenetic β-diversity was impacted more by soil depth, while the taxonomic β-diversity changed more between geographic locations. The distance-decay was lower in the topsoil than in all subsoil layers analysed. Moreover, some subsoil layers were influenced more by geographic distance than any edaphic variable, including pH. Although different factors affected the topsoil and subsoil biogeography, niche-based models explained the community assembly of all soil layers. This comprehensive study contributed to elucidating important aspects of soil bacterial biogeography including the major impact of soil depth on the phylogenetic β-diversity, and the greater influence of geographic distance on subsoil than on topsoil bacterial communities in agroecosystems.This article is published as Lopes, Lucas Dantas, Stephanie L. Futrell, Emily E. Wright, Gerasimos J. Danalatos, Michael J. Castellano, Tony J. Vyn, Sotirios V. Archontoulis, and Daniel P. Schachtman. "Soil depth and geographic distance modulate bacterial β‐diversity in deep soil profiles throughout the US Corn Belt." Molecular Ecology (2023). doi:10.1111/mec.16945. Posted with permission.This is an open access article under the terms of the Creative Commons Attribution-NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes