The effect of widespread early aerobic marine ecosystems on methane cycling and the Great Oxidation

The balance of evidence suggests that oxygenic photosynthesis had evolved by 3.0-2.7 Ga, several hundred million years prior to the Great Oxidation ≈2.4 Ga. Previous work has shown that if oxygenic photosynthesis spread globally prior to the Great Oxidation, this could have supported widespread aerobic ecosystems in the surface ocean, without oxidising the atmosphere. Here we use a suite of models to explore the implications for carbon cycling and the Great Oxidation. We find that recycling of oxygen and carbon within early aerobic marine ecosystems would have restricted the balanced fluxes of methane and oxygen escaping from the ocean, lowering the atmospheric concentration of methane in the Great Oxidation transition and its aftermath. This in turn would have minimised any bi-stability of atmospheric oxygen, by weakening a stabilising feedback on oxygen from hydrogen escape to space. The result would have been a more reversible and probably episodic rise of oxygen at the Great Oxidation transition, consistent with existing geochemical evidence. The resulting drop in methane levels to ≈10 ppm is consistent with climate cooling at the time but adds to the puzzle of what kept the rest of the Proterozoic warm. A key test of the scenario of abundant methanotrophy in oxygen oases before the Great Oxidation is its predicted effects on the organic carbon isotope (δ13Corg) record. Our open ocean general circulation model predicts δCorg13≈-30 to -45‰ consistent with most data from 2.65 to 2.45 Ga. However, values of δCorg13≈-50‰ require an extreme scenario such as concentrated methanotroph production where shelf-slope upwelling of methane-rich water met oxic shelf water.This work was supported by NERC (NE/I005978/2) and the Leverhulme Trust (RPG-2013-106)

Changing tectonic controls on the long-term carbon cycle from Mesozoic to present

Tectonic drivers of degassing and weathering processes are key long-term controls on atmospheric CO2. However, there is considerable debate over the changing relative importance of different carbon sources and sinks. Existing geochemical models have tended to rely on indirect methods to derive tectonic drivers, such as inversion of the seawater 87Sr/86Sr curve to estimate uplift or continental basalt area. Here we use improving geologic data to update the representation of tectonic drivers in the COPSE biogeochemical model. The resulting model distinguishes CO2 sinks from terrestrial granite weathering, total basalt weathering, and seafloor alteration. It also distinguishes CO2 sources from subduction zone metamorphism and from igneous intrusions. We reconstruct terrestrial basaltic area from data on the extent of large igneous provinces and use their volume to estimate their contribution to degassing. We adopt a recently published reconstruction of subduction-related degassing, and relate seafloor weathering to ocean crust creation rate. Revised degassing alone tends to produce unrealistically high CO2, but this is counteracted by the inclusion of seafloor alteration and global basalt weathering, producing a good overall fit to Mesozoic-Cenozoic proxy CO2 estimates and a good fit to 87Sr/86Sr data. The model predicts that seafloor alteration and terrestrial weathering made similar contributions to CO2 removal through the Triassic and Jurassic, after which terrestrial weathering increased and seafloor weathering declined. We predict that basalts made a greater contribution to silicate weathering than granites through the Mesozoic, before the contribution of basalt weathering declined over the Cenozoic due to decreasing global basaltic area

Environmental selection and resource allocation determine spatial patterns in picophytoplankton cell size

Here we describe a new trait-based model for cellular resource allocation that we use to investigate the relative importance of different drivers for small cell size in phytoplankton. Using the model, we show that increased investment in nonscalable structural components with decreasing cell size leads to a trade-off between cell size, nutrient and light affinity, and growth rate. Within the most extreme nutrient-limited, stratified environments, resource competition theory then predicts a trend toward larger minimum cell size with increasing depth. We demonstrate that this explains observed trends using a marine ecosystem model that represents selection and adaptation of a diverse community defined by traits for cell size and subcellular resource allocation. This framework for linking cellular physiology to environmental selection can be used to investigate the adaptive response of the marine microbial community to environmental conditions and the adaptive value of variations in cellular physiology

COPSE reloaded: an improved model of biogeochemical cycling over Phanerozoic time

The ‘COPSE’ (Carbon, Oxygen, Phosphorus, Sulphur and Evolution) biogeochemical model predicts the coupled histories and controls on atmospheric O2, CO2 and ocean composition over Phanerozoic time. The forwards modelling approach utilized in COPSE makes it a useful tool for testing mechanistic hypotheses against geochemical data and it has been extended and altered a number of times since being published in 2004. Here we undertake a wholesale revision of the model, incorporating: (1) elaboration and updating of the external forcing factors; (2) improved representation of existing processes, including plant effects on weathering and ocean anoxia; (3) inclusion of additional processes and tracers, including seafloor weathering, volcanic rock weathering and 87Sr/86Sr; (4) updating of the present-day baseline fluxes; and (5) a more efficient and robust numerical scheme. A key aim is to explore how sensitive predictions of atmospheric CO2, O2 and ocean composition are to model updates and ongoing uncertainties. The revised model reasonably captures the long-term trends in Phanerozoic geochemical proxies for atmospheric pCO2, pO2, ocean [SO4], carbonate δ13C, sulphate δ34S and carbonate 87Sr/86Sr. It predicts a two-phase drawdown of atmospheric CO2 with the rise of land plants and associated cooling phases in the Late Ordovician and Devonian-early Carboniferous, followed by broad peaks of atmospheric CO2 and temperature in the Triassic and mid-Cretaceous – although some of the structure in the CO2 proxy record is missed. The model robustly predicts a mid-Paleozoic oxygenation event due to the earliest land plants, with O2 rising from ~ 5% to > 17% of the atmosphere and oxygenating the ocean. Thereafter, atmospheric O2 is effectively regulated with remaining fluctuations being a Carboniferous–Permian O2 peak ~ 26% linked to burial of terrestrial organic matter in coal swamps, a Triassic–Jurassic O2 minimum ~ 21% linked to low uplift, a Cretaceous O2 peak ~ 26% linked to high degassing and weathering fluxes, and a Cenozoic O2 decline

Selection for Gaia across multiple scales

This is the author accepted manuscript. The final version is available from Elsevier via the DOI in this record.Recently postulated mechanisms and models can help explain the enduring ‘Gaia’ puzzle of environmental regulation mediated by life. Natural selection can produce nutrient recycling at local scales and regulation of heterogeneous environmental variables at ecosystem scales. However, global-scale environmental regulation involves a temporal and spatial decoupling of effects from actors that makes conventional evolutionary explanations problematic. Instead, global regulation can emerge by a process of ‘sequential selection’ in which systems that destabilize their environment are short-lived and result in extinctions and reorganizations until a stable attractor is found. Such persistence-enhancing properties can in turn increase the likelihood of acquiring further persistence-enhancing properties through ‘selection by survival alone’. Thus, Earth system feedbacks provide a filter for persistent combinations of macroevolutionary innovations.T.M.L. was supported by a Royal Society Wolfson Research Merit Award. A.E.N. was supported by Gaia Charity and the University of Exeter

Characterization of extended co-culture of non-typeable Haemophilus influenzae with primary human respiratory tissues

Non-typeable Haemophilus influenzae (NTHi) are human-adapted Gram-negative bacteria that comprise part of the normal flora of the human upper airway, but are also responsible for a number of mucosal infections such as otitis media and bronchitis. These infections often recur and can become chronic. To characterize the effect of long-term co-culture of NTHi with human tissues, we infected primary respiratory epithelial cells grown at the air–liquid interface with three NTHi strains over a range of 1–10 days. Scanning and transmission electron microscopy of tissues confirmed that intact NTHi were persisting paracellularly, while organisms observed in intracellular vacuoles appeared degraded. Furthermore, the apical surface and tight junctions of the infected tissues were undisturbed, with high transepithelial electrical resistances, while the basal cell layer displayed more junctional disorganization and wider intercellular spaces than the uninfected control tissues. Although the tissues elaborated the cytokine profile reported for NTHi-caused otitis media in vivo, there was little change in the dynamics of cytokine secretion over the time points tested. Finally, we report that NTHi strains released outer membrane vesicles (OMVs) during extended co-culture with the tissues, and show that these OMVs directly interact with host cell membranes

Ocean acidification and the Permo-Triassic mass extinction.

Ocean acidification triggered by Siberian Trap volcanism was a possible kill mechanism for the Permo-Triassic Boundary mass extinction, but direct evidence for an acidification event is lacking. We present a high-resolution seawater pH record across this interval, using boron isotope data combined with a quantitative modeling approach. In the latest Permian, increased ocean alkalinity primed the Earth system with a low level of atmospheric CO2 and a high ocean buffering capacity. The first phase of extinction was coincident with a slow injection of carbon into the atmosphere, and ocean pH remained stable. During the second extinction pulse, however, a rapid and large injection of carbon caused an abrupt acidification event that drove the preferential loss of heavily calcified marine biota

Unique Neoproterozoic carbon isotope excursions sustained by coupled evaporite dissolution and pyrite burial

The Neoproterozoic era witnessed a succession of biological innovations that culminated in diverse animal body plans and behaviours during the Ediacaran–Cambrian radiations. Intriguingly, this interval is also marked by perturbations to the global carbon cycle, as evidenced by extreme fluctuations in climate and carbon isotopes. The Neoproterozoic isotope record has defied parsimonious explanation because sustained 12C-enrichment (low δ13C) in seawater seems to imply that substantially more oxygen was consumed by organic carbon oxidation than could possibly have been available. We propose a solution to this problem, in which carbon and oxygen cycles can maintain dynamic equilibrium during negative δ13C excursions when surplus oxidant is generated through bacterial reduction of sulfate that originates from evaporite weathering. Coupling of evaporite dissolution with pyrite burial drives a positive feedback loop whereby net oxidation of marine organic carbon can sustain greenhouse forcing of chemical weathering, nutrient input and ocean margin euxinia. Our proposed framework is particularly applicable to the late Ediacaran ‘Shuram’ isotope excursion that directly preceded the emergence of energetic metazoan metabolisms during the Ediacaran–Cambrian transition. Here we show that non-steady-state sulfate dynamics contributed to climate change, episodic ocean oxygenation and opportunistic radiations of aerobic life during the Neoproterozoic era

IFN-γ, IL-4 and IL-13 modulate responsiveness of human airway smooth muscle cells to IL-13

© 2008 Moynihan et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution Licens

Simulating biosignatures from pre-oxygen photosynthesising life on TRAPPIST-1e

This is the author accepted manuscript. The final version is available on open access from Oxford University Press via the DOI in this recordData availability: The model output used for this study will be made available following this work’s acceptance for publicationIn order to assess observational evidence for potential atmospheric biosignatures on exoplanets, it will be essential to test whether spectral fingerprints from multiple gases can be explained by abiotic or biotic-only processes. Here, we develop and apply a coupled 1D atmosphere-ocean-ecosystem model to understand how primitive biospheres, which exploit abiotic sources of H2 , CO and O2 , could influence the atmospheric composition of rocky terrestrial exoplanets. We apply this to the Earth at 3.8 Ga and to TRAPPIST-1e. We focus on metabolisms that evolved before the evolution of oxygenic photosynthesis, which consume H2 and CO and produce potentially detectable levels of CH4 . O2 -consuming metabolisms are also considered for TRAPPIST-1e, as abiotic O2 production is predicted on M-dwarf orbiting planets. We show that these biospheres can lead to high levels of surface O2 (approximately 1–5 %) as a result of CO consumption, which could allow high O2 scenarios, by removing the main loss mechanisms of atomic oxygen. Increasing stratospheric temperatures, which increases atmospheric OH can reduce the likelihood of such a state forming. O2 -consuming metabolisms could also lower O2 levels to around 10 ppm and support a productive biosphere at low reductant inputs. Using predicted transmission spectral features from CH4 , CO, O2 /O3 and CO2 across the hypothesis space for tectonic reductant input, we show that biotically-produced CH4 may only be detectable at high reductant inputs. CO is also likely to be a dominant feature in transmission spectra for planets orbiting M-dwarfs, which could reduce the confidence in any potential biosignature observations linked to these biospheres.Science and Technology Facilities Council (STFC)UK Research and InnovationJohn Templeton FoundationLeverhulme TrustHill Family ScholarshipInstitute of Physic