Genomic adaptation to drought in wild barley is driven by edaphic natural selection at the Tabigha Evolution Slope

Ecological divergence at a microsite suggests adaptive evolution, and this study examined two abutting wild barley populations, each 100 m across, differentially adapted to drought tolerance on two contrasting soil types, Terra Rossa and basalt at the Tabigha Evolution Slope, Israel. We resequenced the genomes of seven and six wild barley genotypes inhabiting the Terra Rossa and basalt soils, respectively, and identified a total of 69,192,653 single-nucleotide variants (SNVs) and insertions/deletions in comparison with a reference barley genome. Comparative genomic analysis between these abutting wild barley populations involved 19,615,087 high-quality SNVs. The results revealed dramatically different selection sweep regions relevant to drought tolerance driven by edaphic natural selection within 2,577 selected genes in these regions, including key drought-responsive genes associated with ABA synthesis and degradation (such as Cytochrome P450 protein) and ABA receptor complex (such as PYL2, SNF1-related kinase). The genetic diversity of the wild barley population inhabiting Terra Rossa soil is much higher than that from the basalt soil. Additionally, we identified different sets of genes for drought adaptation in the wild barley populations from Terra Rossa soil and from wild barley populations from Evolution Canyon I at Mount Carmel. These genes are associated with abscisic acid signaling, signaling and metabolism of reactive oxygen species, detoxification and antioxidative systems, rapid osmotic adjustment, and deep root morphology. The unique mechanisms for drought adaptation of the wild barley from the Tabigha Evolution Slope may be useful for crop improvement, particularly for breeding of barley cultivars with high drought tolerance

Surface passivation for highly active, selective, stable, and scalable CO2 electroreduction

Electrochemical conversion of CO2 to formic acid using Bismuth catalysts is one the most promising pathways for industrialization. However, it is still difficult to achieve high formic acid production at wide voltage intervals and industrial current densities because the Bi catalysts are often poisoned by oxygenated species. Herein, we report a Bi3S2 nanowire-ascorbic acid hybrid catalyst that simultaneously improves formic acid selectivity, activity, and stability at high applied voltages. Specifically, a more than 95% faraday efficiency was achieved for the formate formation over a wide potential range above 1.0 V and at ampere-level current densities. The observed excellent catalytic performance was attributable to a unique reconstruction mechanism to form more defective sites while the ascorbic acid layer further stabilized the defective sites by trapping the poisoning hydroxyl groups. When used in an all-solid-state reactor system, the newly developed catalyst achieved efficient production of pure formic acid over 120 hours at 50 mA cm–2 (200 mA cell current)

A sheep pangenome reveals the spectrum of structural variations and their effects on tail phenotypes

Structural variations (SVs) are a major contributor to genetic diversity and phenotypic variations, but their prevalence and functions in domestic animals are largely unexplored. Here we generated high-quality genome assemblies for 15 individuals from genetically diverse sheep breeds using Pacific Biosciences (PacBio) high-fidelity sequencing, discovering 130.3 Mb nonreference sequences, from which 588 genes were annotated. A total of 149,158 biallelic insertions/deletions, 6531 divergent alleles, and 14,707 multiallelic variations with precise breakpoints were discovered. The SV spectrum is characterized by an excess of derived insertions compared to deletions (94,422 vs. 33,571), suggesting recent active LINE expansions in sheep. Nearly half of the SVs display low to moderate linkage disequilibrium with surrounding single-nucleotide polymorphisms (SNPs) and most SVs cannot be tagged by SNP probes from the widely used ovine 50K SNP chip. We identified 865 population-stratified SVs including 122 SVs possibly derived in the domestication process among 690 individuals from sheep breeds worldwide. A novel 168-bp insertion in the 5' untranslated region (5' UTR) of HOXB13 is found at high frequency in long-tailed sheep. Further genome-wide association study and gene expression analyses suggest that this mutation is causative for the long-tail trait. In summary, we have developed a panel of high-quality de novo assemblies and present a catalog of structural variations in sheep. Our data capture abundant candidate functional variations that were previously unexplored and provide a fundamental resource for understanding trait biology in sheep

Research on High Precision and Deterministic Figuring for Shaft Parts Based on Abrasive Belt Polishing

A deterministic figuring method for cylindrical surface based on abrasive belt polishing is proposed in this study in order to improve the geometric accuracy of metal shaft parts. The principal motion of material removal is performed through the axial oscillation of the abrasive belt, and the different material removal at different positions can be obtained through servo control of the machine tool spindle by removing high error spots on the cylindrical surface and finally deterministically corrects the roundness error. An abrasive belt-based deterministic figuring device was built, and the figuring experiments were performed on the surface of steel workpieces 100 mm in diameter and 130 mm in effective length. The roundness errors of the entire workpiece after twice figuring iterations decreased nearly from the initial 3 μm to 1 μm, which preliminary verified the feasibility of this method. This deterministic figuring method is expected to break the machining accuracy limit and improve the rotation precision of the precision shaft parts such as the aerostatic spindle

Genome-Wide DNA Methylation Patterns of Muscle and Tail-Fat in DairyMeade Sheep and Mongolian Sheep

This study aimed to explore the genome-wide DNA methylation differences between muscle and tail-fat tissues of DairyMeade sheep (thin-tailed, lean carcass) and Mongolian sheep (fat-tailed, fat-deposited carcass). Whole-genome bisulfite sequencing (WGBS) was conducted and the global DNA methylation dynamics were mapped. Generally, CGs had a higher DNA methylation level than CHHs and CHGs, and tail-fat tissues had higher CG methylation levels than muscle tissues. For DNA repeat elements, SINE had the highest methylation level, while Simple had the lowest. When dividing the gene promoter region into small bins (200 bp per bin), the bins near the transcription start site (±200 bp) had the highest CG count per bin but the lowest DNA methylation levels. A series of DMRs were identified in muscle and tail-fat tissues between the two breeds. Among them, the introns of gene CAMK2D (calcium/calmodulin-dependent protein kinase II δ) demonstrated significant DNA methylation level differences between the two breeds in both muscle and tail-fat tissues, and it may play a crucial role in fat metabolism and meat quality traits. This study may provide basic datasets and references for further epigenetic modification studies during sheep genetic improvement

Design of Compound Machine Tool for Ultra-Precision Shaft Parts

Ultra-precision shaft components are widely used, such as the shaft core of air-floating spindle, etc. At present, the final precision of such workpieces are difficult to reach through CNC machining tools, but often with the help of manual grinding, of which the machining precision and efficiency are greatly limited. Based on the deterministic figuring method, this paper uses an abrasive belt polishing machine to carry out ultra-precision figuring experiments on shaft parts. On this basis, an ultra-precision composite machine tool for shaft parts is designed with the functions of turning, grinding and abrasive belt polishing. The dynamic performance requirements of the machine tool are put forward by analyzing the precision index of the workpiece and the error control principle of deterministic figuring, and the structure of machine tool is designed and the performance parameters of each part are selected. combined with the finite element analysis, the key components are optimized to meet the machining requirements of 0.1μm roundness and 1μm cylindricity on the steel shaft

Research on Deterministic Figuring of Ultra-Precision Shaft Parts Based on Analysis and Control of Figuring Ability

The application of ultra-precision shaft parts is widely used, such as the spindle core of the air bearing spindle in ultra-precision machine tools. The precision of the spindle core is extremely high, and it is very difficult to obtain directly by traditional Computer Numerical Control (CNC) machine tools but is mostly obtained by manual grinding, whose machining efficiency is greatly limited. Based on the deterministic figuring theory, this paper focuses on the ultra-precision roundness, optimizing the filtering parameters of the measurement error data and studying the generation mechanism of the removal function morphology; the shape of the removal function is adjusted by combining the analysis of the figuring ability and positioning error. Finally, the optimized removal function is used on an experimental steel shaft, the average roundness convergence ratio is 72% higher than that of the original removal function, and the roundness reaches a 0.1 μm level. The result shows that a reasonable filtering of measured data and the removal function adjusted for the surface feature can improve the efficiency and precision of deterministic figuring on shaft parts

Cathepsin B-sensitive and biocompatible dendritic polyHPMA-gemcitabine prodrug-based nanoscale system markedly enhances the antitumor activity

To improve therapeutic indexes of gemcitabine (GEM), a stimuli-responsive dendritic polyHPMA copolymer conjugated with gemcitabine (Dendritic polyHPMA-GEM) prodrug was designed and synthesized via one-pot synthesis of RAFT polymerization. The prodrug with dendritic architectures is able to aggregate and form stable nanoscale system with a size of 46 nm. The dendritic prodrug with high molecular weight (HMW) of 168 kDa can biodegrade to low molecular weight (LMW, 29 kDa) segments for excretion. The prodrug demonstrates enzyme-responsive drug release features, and over 95% GEM was released from the carrier with the Cathepsin B within 3 h. The cellular mechanism of the dendritic prodrug was studied, suggesting the cytotoxicity is associated with the cell uptake and cell apoptosis. The prodrug shows good hemocompatibility and in vivo biosafety. Of interest, the dendritic polymer prodrug displays high accumulation within tumors, and markedly improves the in vivo antitumor activity against 4T1 murine breast cancer model compared to the free GEM. These in vivo antitumor activities are characterized as with markedly suppressed tumor volumes, indicating as the much higher tumor growth inhibition (TGI 83%) than that in GEM treatment (TGI, 36%), moreover some tumors are eliminated. The tumor xenograft immunohistochemistry study clearly indicates that the tumor apoptosis is through antiangiogenic effects. These results suggest that the stimuli-responsive dendritic polymer-gemcitabine has great potential as an efficient anticancer agen