Automated mapping of environmental variables from a SEIS or SISE perspective

The INTAMAP FP6 project has developed an interoperable framework for real-time automatic mapping of critical environmental variables by extending spatial statistical methods and employing open, web-based, data exchange protocols and visualisation tools. This paper will give an overview of the underlying problem, of the project, and discuss which problems it has solved and which open problems seem to be most relevant to deal with next. The interpolation problem that INTAMAP solves is the generic problem of spatial interpolation of environmental variables without user interaction, based on measurements of e.g. PM10, rainfall or gamma dose rate, at arbitrary locations or over a regular grid covering the area of interest. It deals with problems of varying spatial resolution of measurements, the interpolation of averages over larger areas, and with providing information on the interpolation error to the end-user. In addition, monitoring network optimisation is addressed in a non-automatic context

Fire Activity Inside and Outside Protected Areas in Sub-Saharan Africa: A Continental Analysis of Fire and its Implications for Biodiversity and Land Management

Fire is an important ecological factor in many natural ecosystems. Without doubt one of the biomes with the highest fire activity in the world is the African savannah. Savannahs have evolved with fires since climate in these regions is characterized by definite dry and wet seasons that create the conditions for burning. During the wet months the herbaceous vegetation shows a quick growth, followed by a long dry period during which the abundant build-up of fine materials becomes highly flammable and most of fires occur. Animals and plants are adapted to these conditions and their lives depend on recurrent fires. In this context fire becomes an essential element to promote biodiversity and nature conservation. Park managers are using programmed fires as a tool to maintain the habitats and favorable conditions to the animal communities. Satellite products like burned areas and active fire maps are a valuable mean to analyze the fire activity and provide support to experts working for conservation and natural resource management. In the framework of the Digital Observatory for Protected Areas (DOPA), the MONDE group (Monitoring Natural Resources for Development) of the Joint Research Centre of the European Commission is using satellite products to analyze the fire occurrence and its effects on protected areas located in sub-Saharan Africa. Information on the fire activity was derived from the MODIS fire products (active fires and burned areas) and allows the DOPA to provide support to park managers as well as to experts working for conservation and natural resource management. We assessed 741 protected areas classified by the IUCN (International Union for Conservation of Nature) with a level of protection between class I and IV. The MODIS datasets are available since the year 2000 and were used to characterize the spatio-temporal distribution of fires over a period of 10 years. Information on fire activity was extracted for the protected areas and a 25km buffer zone around each of them. The region outside the protected areas was used for comparison in order to identify differences or similarities between their fire activities. This also contributed to understand how management and conservation influence fire and assess the level of isolation of the protected areas. The long time series allowed the identification of trends and the interannual variability in the fire activity. The dry season length was determined using FEWS RFE rainfall data (implemented at NOAA's Climate Prediction Center). Within each dry season we identified three periods (early, middle and late) in order to characterize the climatic and environmental conditions at which fires occur and identify trends and patterns. Every period of the dry season lasts two months and shows different conditions of temperature and drought level. Fire activity was characterized combining the information on active fires and burned areas. For each year we determined the fire seasonality, the fire frequency, the main vegetation types affected, the extent and intensity of burning. This information was also used to distinguish management fires from those related to other human activities like transhumance, agriculture and poaching in order to identify possible sources of threat to the protected areas. Information on the road network, the location of villages and cultivated fields were also included. Future work will include a combined analysis of fire activity and land-cover, land-cover change information so that management plans adopted in protected areas can be evaluated in their effectiveness to promote biodiversity and nature conservation.JRC.DDG.H.3-Global environement monitorin

The challenge of real-time automatic mapping for environmental monitoring network management

The automatic interpolation of environmental monitoring network data such as air quality or radiation levels in real-time setting poses a number of practical and theoretical questions. Among the problems found are (i) dealing and communicating uncertainty of predictions, (ii) automatic (hyper)parameter estimation, (iii) monitoring network heterogeneity, (iv) dealing with outlying extremes, and (v) quality control. In this paper we discuss these issues, in light of the spatial interpolation comparison exercise held in 2004

eHabitat: Large scale modelling of habitats types and similarities for conservation and management of protected areas.

eHabitat, which is one of the services supporting the DOPA, the Digital Observatory for Protected Areas, proposes a habitat replaceability index (HRI) which can be used for characterizing each protected area worldwide. More precisely, eHabitat computes for each protected area a map of probabilities to find areas within the corresponding ecoregion presenting ecological characteristics that are similar to those found in the selected protected area. The HRI is then computed as the ratio between similar areas outside park and the park area itself. We here present an improved version which includes an automatic segmentation of the parks prior to HRI computation. This allows for a discrimination of different habitats types inside of protected areas. By reducing the variability within landscape patches, similarity values can be considered to be more accurate. This approach should also further improve the associated niche modelling tools.JRC.H.5-Land Resources Managemen

A web processing service for validating interpolation

An interoperable web processing service (WPS) for the automatic interpolation of environmental data has been developed in the frame of the INTAMAP project. In order to assess the performance of the interpolation method implemented, a validation WPS has also been developed. This validation WPS can be used to perform leave one out and K-fold cross validation: a full dataset is submitted and a range of validation statistics and diagnostic plots (e.g. histograms, variogram of residuals, mean errors) is received in return. This paper presents the architecture of the validation WPS and a case study is used to briefly illustrate its use in practice. We conclude with a discussion on the current limitations of the system and make proposals for further developments

Open-source mapping and services for Web-based land-cover validation

Monitoring land-cover changes on sites of conservation importance allows environmental problems to be detected, solutions to be developed and the effectiveness of actions to be assessed. However, the remoteness of many sites or a lack of resources means these data are frequently not available. Remote sensing may provide a solution, but large-scale mapping and change detection may not be appropriate, necessitating site-level assessments. These need to be easy to undertake, rapid and cheap. We present an example of a Web-based solution based on free and open-source software and standards (including PostGIS, OpenLayers, Web Map Services, Web Feature Services and GeoServer) to support assessments of land-cover change (and validation of global land-cover maps). Authorised users are provided with means to assess land-cover visually and may optionally provide uncertainty information at various levels: from a general rating of their confidence in an assessment to a quantification of the proportions of land-cover types within a reference area. Versions of this tool have been developed for the TREES-3 initiative (Simonetti, Beuchle and Eva, 2011). This monitors tropical land-cover change through ground-truthing at latitude / longitude degree confluence points, and for monitoring of change within and around Important Bird Areas (IBAs) by Birdlife International and the Royal Society for the Protection of Birds (RSPB). In this paper we present results from the second of these applications. We also present further details on the potential use of the land-cover change assessment tool on sites of recognised conservation importance, in combination with NDVI and other time series data from the eStation (a system for receiving, processing and disseminating environmental data). We show how the tool can be used to increase the usability of earth observation data by local stakeholders and experts, and assist in evaluating the impact of protection regimes on land-cover change

Uncertainty propagation in the Model Web: A case study with e-Habitat

e-Habitat is a Web Processing Service (WPS) designed to compute the likelihood of finding ecosystems with equal properties. Inputs to the WPS, typically thematic geospatial ¿layers¿, can be discovered using standardised catalogues, and the outputs tailored to specific end user needs. Because these layers can range from geophysical data captured through remote sensing to socio-economical indicators, e-Habitat is exposed to a broad range of different types and levels of uncertainties. Potentially chained to other services to perform ecological forecasting for example, e-Habitat would be an additional component further propagating uncertainties from a potentially long chain of model services. This integration of complex resources increases the challenges in dealing with uncertainty. For such a system, as envisaged by initiatives such as the Group on Earth Observation¿s ¿Model Web¿, to be used for policy or decision making, users must be provided with information on the quality of the outputs since all system components will be subject to uncertainty. UncertWeb will create the Uncertainty enabled Model Web by promoting interoperability between data and models with quantified uncertainty, building on existing open, international standards. UncertWeb will thus develop open source implementations of encoding standards, service interface profiles, discovery and chaining mechanisms, and generic tools to realize a "Model Web" taking uncertainty in data and models into account. It is the objective of this paper to discuss the main types of uncertainties e-Habitat has to deal with and to present the benefits of the use of the UncertWeb framework.JRC.H.3-Global environement monitorin

Indicators of biodiversity in agroecosystems: insights from Article 17 of the Habitat Directive and IUCN Red List of Threatened Species

In the current decade, the main goals for biodiversity conservation and environmental protection at the level of the European Union are set in the EU Biodiversity Strategy to 2020: halting biodiversity loss and restoring ecosystem services. A key requirement for the implementation of the Strategy in terms of targeting measures and funds, and monitoring trends is the construction of a biodiversity knowledge base, including spatially explicit information on biodiversity distribution and ecosystem condition. The work presented in this report is based on the analysis of two primary datasets on biodiversity and habitat status. The first one is the Habitats assessment carried out by EU Members States under Art.17 of the Habitats and Birds Directive. Information reported by Member States is analysed to derive the links between pressures and conservation status, showing that agriculture-related habitats have, on average, a worse conservation status when compared to other habitats. Consequently, threats and pressures having most influenced the status of the agricultural-related habitats can be identified. The second one is the global dataset on species threat status elaborated by The International Union for Conservation of Nature (IUCN). Spatially explicit representations of species distribution, status and richness across the EU 28 are provided, and most importantly the identification of wide geographic variables linked to ecological theory is presented, that explain to a large extent the continental trend in species richness. Finally, an example is presented of how the two exploited datasets can be jointly used by cross-tabulating data on habitats assessments and species threat status in a spatially explicit way at 10 km resolution, aiming at identifying hotspots were policy intervention is needed

Monitoring recreation across European nature areas: A geo-database of visitor counts, a review of literature and a call for a visitor counting reporting standard

Nature recreation and tourism is a substantial ecosystem service of Europe’s countryside that has a substantial economic value and contributes considerably to income and employment of local communities. Highlighting the recreational value and economic contribution of nature areas can be used as a strong argument for the funding of protected and recreational areas. The total number of recreational visits of a nature area has been recognised as a major determinant of its economic recreational value and its contribution to local economies. This paper presents an international geodatabase on recreational visitor numbers to non-urban ecosystems, containing 1,267 observations at 518 separate case study areas throughout Europe. The monitored sites are described by their centroid coordinates and shape files displaying the exact extension of the sites. Therefore, the database illustrates the spatial distribution of visitor counting throughout Europe and can be used for secondary research, such as for validation of spatially explicit recreational ecosystem service models and for identifying relevant drivers of recreational ecosystem services. To develop the database, we review visitor monitoring literature throughout Europe and give an overview of such activities with special attention to visitor counting. We identify one major shortcoming in available literature, which relates to the presentation, study area definition and methodological reporting of conducted visitor counting studies. Insufficient reporting hampers the identification of the study area, the comparability of different studies and the evaluation of the studies’ quality. Based on our findings, we propose a standardised reporting template for visitor counting studies and advanced data sharing for recreational visitor data. Researchers and institutions are invited to report on their visitor counting studies via our web interface at rris.biopama.org/visitor-reporting to contribute to a global visitor database that will be shared via the ESP Visualisation tool (http://esp-mapping.net)

Supporting interoperable interpolation: the INTAMAP approach

In many Environmental Information Systems the actual observations arise from a discrete monitoring network which might be rather heterogeneous in both location and types of measurements made. In this paper we describe the architecture and infrastructure for a system, developed as part of the EU FP6 funded INTAMAP project, to provide a service oriented solution that allows the construction of an interoperable, automatic, interpolation system. This system will be based on the Open Geospatial Consortium’s Web Feature Service (WFS) standard. The essence of our approach is to extend the GML3.1 observation feature to include information about the sensor using SensorML, and to further extend this to incorporate observation error characteristics. Our extended WFS will accept observations, and will store them in a database. The observations will be passed to our R-based interpolation server, which will use a range of methods, including a novel sparse, sequential kriging method (only briefly described here) to produce an internal representation of the interpolated field resulting from the observations currently uploaded to the system. The extended WFS will then accept queries, such as ‘What is the probability distribution of the desired variable at a given point’, ‘What is the mean value over a given region’, or ‘What is the probability of exceeding a certain threshold at a given location’. To support information-rich transfer of complex and uncertain predictions we are developing schema to represent probabilistic results in a GML3.1 (object-property) style. The system will also offer more easily accessible Web Map Service and Web Coverage Service interfaces to allow users to access the system at the level of complexity they require for their specific application. Such a system will offer a very valuable contribution to the next generation of Environmental Information Systems in the context of real time mapping for monitoring and security, particularly for systems that employ a service oriented architecture