Identification of sites phosphorylated by the vaccinia virus B1R kinase in viral protein H5R

Background: Vaccinia virus gene B1R encodes a erine/threonine protein kinase. In vitro this protein kinase phosphorylates ribosomal proteins Sa and S2 and vaccinia virus protein H5R, proteins that become phosphorylated during infection. Nothing is known about the sites phosphorylated on these proteins or the general substrate specificity of the kinase. The work described is the first to address these questions. Results: Vaccinia virus protein H5R was phosphorylated by the B1R protein kinase in vitro, digested with V8 protease, and phosphopeptides separated by HPLC. The N-terminal sequence of one radioactively labelled phosphopeptide was determined and found to correspond to residues 81-87 of the protein, with Thr-84 and Thr-85 being phosphorylated. A synthetic peptide based on this region of the protein was shown to be a substrate for the B1R protein kinase, and the extent of phosphorylation was substantially decreased if either Thr residue was replaced by an Ala. Conclusions: We have identified the first phosphorylation site for the vaccinia virus B1R protein kinase. This gives important information about the substrate-specificity of the enzyme, which differs from that of other known protein kinases. It remains to be seen whether the same site is phosphorylated in vivo

Novel fabrication technique for planar glass waveguides

A novel technique has been developed for the deposition of low-loss planar glass waveguides by directly spin coating from the liquid, thus overcoming the problems of reproducing glass stoichiometry when depositing from the vapour

Towards an all-integrated MOPA configuration using Yb-doped ion-exchanged waveguides

In this paper, we present an ion-exchanged Yb-glass waveguide amplifier, seeded by an ion-exchanged Yb-glass waveguide laser demonstrating a gain as high as 10 dB. We also present multi-GHz, mode-locked ion-exchanged waveguide lasers and discuss the development of a fully integrated high-power, multi-GHz waveguide sourc

Cosmic String Cusps with Small-Scale Structure: Their Forms and Gravitational Waveforms

We present a method for the introduction of small-scale structure into strings constructed from products of rotation matrices. We use this method to illustrate a range of possibilities for the shape of cusps that depends on the properties of the small-scale structure. We further argue that the presence of structure at cusps under most circumstances leads to the formation of loops at the size of the smallest scales. On the other hand we show that the gravitational waveform of a cusp remains generally unchanged; the primary effect of small-scale structure is to smooth out the sharp waveform emitted in the direction of cusp motion.Comment: RevTeX, 8 pages. Replaced with version accepted for publication by PR

1.5W diode-pumped monolithic planar waveguide laser

We describe a compact and efficient Nd:YAG waveguide laser pumped by a diode-bar. An output of 1.5W is obtained for 6W incident power, with significant brightness enhancement

A Twistor Formulation of the Non-Heterotic Superstring with Manifest Worldsheet Supersymmetry

We propose a new formulation of the $D=3$ type II superstring which is manifestly invariant under both target-space $N=2$ supersymmetry and worldsheet $N=(1,1)$ super reparametrizations. This gives rise to a set of twistor (commuting spinor) variables, which provide a solution to the two Virasoro constraints. The worldsheet supergravity fields are shown to play the r\^ole of auxiliary fields.Comment: 21p., LaTe

Cartan subalgebras in C*-algebras of Hausdorff etale groupoids

The reduced $C^*$-algebra of the interior of the isotropy in any Hausdorff \'etale groupoid $G$ embeds as a $C^*$-subalgebra $M$ of the reduced $C^*$-algebra of $G$. We prove that the set of pure states of $M$ with unique extension is dense, and deduce that any representation of the reduced $C^*$-algebra of $G$ that is injective on $M$ is faithful. We prove that there is a conditional expectation from the reduced $C^*$-algebra of $G$ onto $M$ if and only if the interior of the isotropy in $G$ is closed. Using this, we prove that when the interior of the isotropy is abelian and closed, $M$ is a Cartan subalgebra. We prove that for a large class of groupoids $G$ with abelian isotropy---including all Deaconu--Renault groupoids associated to discrete abelian groups---$M$ is a maximal abelian subalgebra. In the specific case of $k$-graph groupoids, we deduce that $M$ is always maximal abelian, but show by example that it is not always Cartan.Comment: 14 pages. v2: Theorem 3.1 in v1 incorrect (thanks to A. Kumjain for pointing out the error); v2 shows there is a conditional expectation onto $M$ iff the interior of the isotropy is closed. v3: Material (including some theorem statements) rearranged and shortened. Lemma~3.5 of v2 removed. This version published in Integral Equations and Operator Theor

MEIS investigations of surface structure

The early work of the FOM-AMOLF group in Amsterdam clearly demonstrated the potential of medium energy ion scattering (MEIS), typically using 100 keV H+ incident ions, to investigate the structure of surfaces, but most current applications of the method are focussed on near-surface compositional studies of non-crystalline films. However, the key strengths of the MEIS technique, notably the use of blocking curves in double-alignment experiments and absolute yield measurements, are extremely effective in providing detailed near-surface structural information for a wide range of crystalline materials. This potential and the underlying methodology, is illustrated through examples of applications to the study of layer-dependent composition and structure in alloy surfaces, in studies of the surface crystallography of an oxide surface (rutile TiO2(1 1 0)) and in investigations of complex adsorbate-induced reconstruction of metal surfaces, including the pseudo-(1 0 0) reconstruction of Cu(1 1 1) induced by adsorption of atomic N and molecular methylthiolate (CH3S–). In addition to the use of calibrated blocking curves, the use of the detailed spectral shape of the surface peak in the scattered ion energy spectra, as a means of providing single-atomic layer resolution of the surface structure, is also discussed

Evolution of Fluctuation in relativistic heavy-ion collisions

We have studied the time evolution of the fluctuations in the net baryon number for different initial conditions and space time evolution scenarios. We observe that the fluctuations at the freeze-out depend crucially on the equation of state (EOS) of the system and for realistic EOS the initial fluctuation is substantially dissipated at the freeze-out stage. At SPS energies the fluctuations in net baryon number at the freeze-out stage for quark gluon plasma and hadronic initial state is close to the Poissonian noise for ideal as well as for EOS obtained by including heavier hadronic degrees of freedom. For EOS obtained from the parametrization of lattice QCD results the fluctuation is larger than Poissonian noise. It is also observed that at RHIC energies the fluctuations at the freeze-out point deviates from the Poissonian noise for ideal as well as realistic equation of state, indicating presence of dynamical fluctuations.Comment: 9 pages and 6 figures (Major modifications done

Exact results for hydrogen recombination on dust grain surfaces

The recombination of hydrogen in the interstellar medium, taking place on surfaces of microscopic dust grains, is an essential process in the evolution of chemical complexity in interstellar clouds. The H_2 formation process has been studied theoretically, and in recent years also by laboratory experiments. The experimental results were analyzed using a rate equation model. The parameters of the surface, that are relevant to H_2 formation, were obtained and used in order to calculate the recombination rate under interstellar conditions. However, it turned out that due to the microscopic size of the dust grains and the low density of H atoms, the rate equations may not always apply. A master equation approach that provides a good description of the H_2 formation process was proposed. It takes into account both the discrete nature of the H atoms and the fluctuations in the number of atoms on a grain. In this paper we present a comprehensive analysis of the H_2 formation process, under steady state conditions, using an exact solution of the master equation. This solution provides an exact result for the hydrogen recombination rate and its dependence on the flux, the surface temperature and the grain size. The results are compared with those obtained from the rate equations. The relevant length scales in the problem are identified and the parameter space is divided into two domains. One domain, characterized by first order kinetics, exhibits high efficiency of H_2 formation. In the other domain, characterized by second order kinetics, the efficiency of H_2 formation is low. In each of these domains we identify the range of parameters in which, the rate equations do not account correctly for the recombination rate. and the master equation is needed.Comment: 23 pages + 8 figure