Stable embedded solitons

Stable embedded solitons are discovered in the generalized third-order nonlinear Schroedinger equation. When this equation can be reduced to a perturbed complex modified KdV equation, we developed a soliton perturbation theory which shows that a continuous family of sech-shaped embedded solitons exist and are nonlinearly stable. These analytical results are confirmed by our numerical simulations. These results establish that, contrary to previous beliefs, embedded solitons can be robust despite being in resonance with the linear spectrum.Comment: 2 figures. To appear in Phys. Rev. Let

Dimerization-assisted energy transport in light-harvesting complexes

We study the role of the dimer structure of light-harvesting complex II (LH2) in excitation transfer from the LH2 (without a reaction center (RC)) to the LH1 (surrounding the RC), or from the LH2 to another LH2. The excited and un-excited states of a bacteriochlorophyll (BChl) are modeled by a quasi-spin. In the framework of quantum open system theory, we represent the excitation transfer as the total leakage of the LH2 system and then calculate the transfer efficiency and average transfer time. For different initial states with various quantum superposition properties, we study how the dimerization of the B850 BChl ring can enhance the transfer efficiency and shorten the average transfer time.Comment: 11 pages, 6 figure

Sequential stopping for high-throughput experiments

In high-throughput experiments, the sample size is typically chosen informally. Most formal sample-size calculations depend critically on prior knowledge. We propose a sequential strategy that, by updating knowledge when new data are available, depends less critically on prior assumptions. Experiments are stopped or continued based on the potential benefits in obtaining additional data. The underlying decision-theoretic framework guarantees the design to proceed in a coherent fashion. We propose intuitively appealing, easy-to-implement utility functions. As in most sequential design problems, an exact solution is prohibitive. We propose a simulation-based approximation that uses decision boundaries. We apply the method to RNA-seq, microarray, and reverse-phase protein array studies and show its potential advantages. The approach has been added to the Bioconductor package gaga

Expert-based development of a standard in CO2 sequestration monitoring technology

Bureau of Economic Geolog