Anharmonicity of flux lattices and thermal fluctuations in layered superconductors

We study elasticity of a perpendicular flux lattice in a layered superconductor with Josephson coupling between layers. We find that the energy contains ln(flux displacement) terms, so that elastic constants cannot be strictly defined. Instead we define effective elastic constants by a thermal average. The tilt modulus has terms with ln(T) which for weak fields, i.e. Josephson length smaller than the flux line spacing, lead to displacement square average proportional to T/ln(T). The expansion parameter indicates that the dominant low temperature phase transition is either layer decoupling at high fields or melting at low fields.Comment: 15 pages, 2 eps figures, Revtex, submitted to Phys. Rev. B. Sunj-class: superconductivit

Dynamics of allosteric transitions in GroEL

The chaperonin GroEL-GroES, a machine which helps some proteins to fold, cycles through a number of allosteric states, the $T$ state, with high affinity for substrate proteins (SPs), the ATP-bound $R$ state, and the $R^{\prime\prime}$ ($GroEL-ADP-GroES$) complex. Structures are known for each of these states. Here, we use a self-organized polymer (SOP) model for the GroEL allosteric states and a general structure-based technique to simulate the dynamics of allosteric transitions in two subunits of GroEL and the heptamer. The $T \to R$ transition, in which the apical domains undergo counter-clockwise motion, is mediated by a multiple salt-bridge switch mechanism, in which a series of salt-bridges break and form. The initial event in the $R \to R^{\prime\prime}$ transition, during which GroEL rotates clockwise, involves a spectacular outside-in movement of helices K and L that results in K80-D359 salt-bridge formation. In both the transitions there is considerable heterogeneity in the transition pathways. The transition state ensembles (TSEs) connecting the $T$, $R$, and $R^{\prime\prime}$ states are broad with the the TSE for the $T \to R$ transition being more plastic than the $R\to R^{\prime\prime}$ TSE. The results suggest that GroEL functions as a force-transmitting device in which forces of about (5-30) pN may act on the SP during the reaction cycle.Comment: 32 pages, 10 figures (Longer version than the one published

Glass phases of flux lattices in layered superconductors

We study a flux lattice which is parallel to superconducting layers, allowing for dislocations and for disorder of both short wavelength and long wavelength. We find that the long wavelength disorder has a significant effect on the phase diagram -- it produces a first order transition within the Bragg glass phase and leads to melting at strong disorder. This then allows a Friedel scenario of 2D superconductivity.Comment: 5 pages, 1 eps figure, Revte

Disorder Induced Transitions in Layered Coulomb Gases and Superconductors

A 3D layered system of charges with logarithmic interaction parallel to the layers and random dipoles is studied via a novel variational method and an energy rationale which reproduce the known phase diagram for a single layer. Increasing interlayer coupling leads to successive transitions in which charge rods correlated in N>1 neighboring layers are nucleated by weaker disorder. For layered superconductors in the limit of only magnetic interlayer coupling, the method predicts and locates a disorder-induced defect-unbinding transition in the flux lattice. While N=1 charges dominate there, N>1 disorder induced defect rods are predicted for multi-layer superconductors.Comment: 4 pages, 2 figures, RevTe

Antiferromagnetic domain walls in lightly doped layered cuprates

Recent ESR data shows rotation of the antiferromagnetic (AF) easy axis in lightly doped layered cuprates upon lowering the temperature. We account for the ESR data and show that it has significant implications on spin and charge ordering according to the following scenario: In the high temperature phase AF domain walls coincide with (110) twin boundaries of an orthorhombic phase. A magnetic field leads to annihilation of neighboring domain walls resulting in antiphase boundaries. The latter are spin carriers, form ferromagnetic lines and may become charged in the doped system. However, hole ordering at low temperatures favors the (100) orientation, inducing a pi/4 rotation in the AF easy axis. The latter phase has twin boundaries and AF domain walls in (100) planes.Comment: 4 pages, 3 figures (1 eps). v2: no change in content, Tex shadow problem cleare

Zero temperature geometric spin dephasing on a ring in presence of an Ohmic environment

We study zero temperature spin dynamics of a particle confined to a ring in presence of spin orbit coupling and Ohmic electromagnetic fluctuations. We show that the dynamics of the angular position $\theta(t)$ are decoupled from the spin dynamics and that the latter is mapped to certain correlations of a spinless particle. We find that the spin correlations in the $z$ direction (perpendicular to the ring) are finite at long times, i.e. do not dephase. The parallel (in plane) components for spin \half do not dephase at weak dissipation but they probably decay as a power law with time at strong dissipation.Comment: 5 pages, submitted to EP

Decoherence of a particle in a ring

We consider a particle coupled to a dissipative environment and derive a perturbative formula for the dephasing rate based on the purity of the reduced probability matrix. We apply this formula to the problem of a particle on a ring, that interacts with a dirty metal environment. At low but finite temperatures we find a dephasing rate $\propto T^{3/2}$, and identify dephasing lengths for large and for small rings. These findings shed light on recent Monte Carlo data regarding the effective mass of the particle. At zero temperature we find that spatial fluctuations suppress the possibility of having a power law decay of coherence.Comment: 5 pages, 1 figure, proofed version to be published in EP

Dephasing of a particle in a dissipative environment

The motion of a particle in a ring of length L is influenced by a dirty metal environment whose fluctuations are characterized by a short correlation distance $\ell << L$. We analyze the induced decoherence process, and compare the results with those obtained in the opposing Caldeira-Leggett limit ($\ell >> L$). A proper definition of the dephasing factor that does not depend on a vague semiclassical picture is employed. Some recent Monte-Carlo results about the effect of finite temperatures on "mass renormalization" in this system are illuminated.Comment: 18 pages, 2 figures, some textual improvements, to be published in JP

Critical Behavior of the Flux-line Tension in Extreme Type-II Superconductors

The entropic corrections to the flux-line energy of extreme type-II superconductors are computed using a schematic dual Villain model description of the flux quanta. We find that the temperature profile of the lower-critical field vanishes polynomially at the transition with an exponent $\nu\cong 2/3$ in the isotropic case, while it exhibits an inflection point for the case of weakly coupled layers in parallel magnetic field. It is argued that vestiges of these effects have already been observed in high-temperature superconductors.Comment: 12 pages of plain TeX, 2 postscipt figures, to appear in Phys. Rev.

Second magnetization peak in flux lattices: the decoupling scenario

The second peak phenomena of flux lattices in layered superconductors is described in terms of a disorder induced layer decoupling transition. For weak disorder the tilt mudulus undergoes an apparent discontinuity which leads to an enhanced critical current and reduced domain size in the decoupled phase. The Josephson plasma frequency is reduced by decoupling and by Josephson glass pinning; in the liquid phase it varies as 1/[BT(T+T_0)] where T is temperature, B is field and T_0 is the disorder dependent temperature of the multicritical point.Comment: 5 pages, 1 eps figure, Revtex. Minor changes, new reference