Anderson impurity model in nonequilibrium: analytical results versus quantum Monte Carlo data

We analyze the spectral function of the single-impurity two-terminal Anderson model at finite voltage using the recently developed diagrammatic quantum Monte Carlo technique as well as perturbation theory. In the (particle-hole-)symmetric case we find an excellent agreement of the numerical data with the perturbative results of second order up to interaction strengths $U/\Gamma \approx 2$, where $\Gamma$ is the transparency of the impurity-electrode interface. The analytical results are obtained in form of the nonequilibrium self-energy for which we present explicit formulas in the closed form at arbitrary bias voltage. We observe an increase of the spectral density around zero energy brought about by the Kondo effect. Our analysis suggests that a finite applied voltage $V$ acts as an effective temperature of the system. We conclude that at voltages significantly larger than the equilibrium Kondo temperature there is a complete suppression of the Kondo effect and no resonance splitting can be observed. We confirm this scenario by comparison of the numerical data with the perturbative results.Comment: 8 pages, 6 figure

A Minimum-Labeling Approach for Reconstructing Protein Networks across Multiple Conditions

The sheer amounts of biological data that are generated in recent years have driven the development of network analysis tools to facilitate the interpretation and representation of these data. A fundamental challenge in this domain is the reconstruction of a protein-protein subnetwork that underlies a process of interest from a genome-wide screen of associated genes. Despite intense work in this area, current algorithmic approaches are largely limited to analyzing a single screen and are, thus, unable to account for information on condition-specific genes, or reveal the dynamics (over time or condition) of the process in question. Here we propose a novel formulation for network reconstruction from multiple-condition data and devise an efficient integer program solution for it. We apply our algorithm to analyze the response to influenza infection in humans over time as well as to analyze a pair of ER export related screens in humans. By comparing to an extant, single-condition tool we demonstrate the power of our new approach in integrating data from multiple conditions in a compact and coherent manner, capturing the dynamics of the underlying processes.Comment: Peer-reviewed and presented as part of the 13th Workshop on Algorithms in Bioinformatics (WABI2013

EMX2 regulates sizes and positioning of the primary sensory and motor areas in neocortex by direct specification of cortical progenitors

Genetic studies of neocortical area patterning are limited, because mice deficient for candidate regulatory genes die before areas emerge and have other compli-cating issues. To define roles for the homeodomain transcription factor EMX2, we engineered nestin-Emx2 transgenic mice that overexpress Emx2 in cortical pro-genitors coincident with expression of endogenous Emx2 and survive postnatally. Cortical size, lamina-tion, thalamus, and thalamocortical pathfinding are normal in homozygous nestin-Emx2 mice. However, primary sensory and motor areas are disproportion-ately altered in size and shift rostrolaterally. Heterozygous transgenics have similar but smaller changes. Opposite changes are found in heterozygous Emx2 knockout mice. Fgf8 expression in the commissural plate of nestin-Emx2 mice is indistinguishable from wild-type, but Pax6 expression is downregulated in rostral cortical progenitors, suggesting that EMX2 re-pression of PAX6 specification of rostral identities contributes to reduced rostral areas. We conclude that EMX2 levels in cortical progenitors disproportionately specify sizes and positions of primary cortical areas

ARSENIC REMOVAL FROM GROUNDWATER USING INDIGENOUS IRON AND MANGANESE OXDIZING BACTERIA

Joint Research on Environmental Science and Technology for the Eart

Electroretinographically-determined scotopic spectral sensitivities of some marine fish

The b-wave threshold spectral sensitivity was determined in three species of marine fish. In all cases, the action spectrum of the dark adapted animal peaked at 510-520 nm and fit Dartnall's template curve for the extinction spectrum of a vitamin A1-based visual pigment. High frequency flicker of the stimulus on a white background revealed a long-wavelengthsensitive photopic mechanism, establishing that these were duplex retinas. We conclude that in these teleosts, the dark adapted b-wave is a reliable indicator of rod function, in marked distinction to the case with goldfish and carp.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/33877/1/0000138.pd

Electric polarization induced by Neel order without magnetic superlattice: experimental study of Cu3Mo2O9 and numerical study of a small spin cluster

We clarify that the antiferromagnetic order in the distorted tetrahedral quasi-one dimensional spin system induces electric polarizations. In this system, the effects of the low dimensionality and the magnetic frustration are expected to appear simultaneously. We obtain the magnetic-field-temperature phase diagram in Cu3Mo2O9 by studying the dielectric constant and the spontaneous electric polarization. Around the tricritical point at 10 T and 8 K, the change of the direction in the electric polarization causes a colossal magnetocapacitance. We calculate the charge redistribution in the small spin cluster consisting of two magnetic tetrahedra to demonstrate the electric polarization induced by the antiferromagnetism.Comment: 10 pages 6 figures, in press in J. Phys. Soc. Jp

Low-energy excitations in the three-dimensional random-field Ising model

The random-field Ising model (RFIM), one of the basic models for quenched disorder, can be studied numerically with the help of efficient ground-state algorithms. In this study, we extend these algorithm by various methods in order to analyze low-energy excitations for the three-dimensional RFIM with Gaussian distributed disorder that appear in the form of clusters of connected spins. We analyze several properties of these clusters. Our results support the validity of the droplet-model description for the RFIM.Comment: 10 pages, 9 figure

Role of mitochondrial raft-like microdomains in the regulation of cell apoptosis

Lipid rafts are envisaged as lateral assemblies of specific lipids and proteins that dissociate and associate rapidly and form functional clusters in cell membranes. These structural platforms are not confined to the plasma membrane; indeed lipid microdomains are similarly formed at subcellular organelles, which include endoplasmic reticulum, Golgi and mitochondria, named raft-like microdomains. In addition, some components of raft-like microdomains are present within ER-mitochondria associated membranes. This review is focused on the role of mitochondrial raft-like microdomains in the regulation of cell apoptosis, since these microdomains may represent preferential sites where key reactions take place, regulating mitochondria hyperpolarization, fission-associated changes, megapore formation and release of apoptogenic factors. These structural platforms appear to modulate cytoplasmic pathways switching cell fate towards cell survival or death. Main insights on this issue derive from some pathological conditions in which alterations of microdomains structure or function can lead to severe alterations of cell activity and life span. In the light of the role played by raft-like microdomains to integrate apoptotic signals and in regulating mitochondrial dynamics, it is conceivable that these membrane structures may play a role in the mitochondrial alterations observed in some of the most common human neurodegenerative diseases, such as Amyotrophic lateral sclerosis, Huntington's chorea and prion-related diseases. These findings introduce an additional task for identifying new molecular target(s) of pharmacological agents in these pathologies

Measurement of tau polarization in e+ e- annihilation at sqrt{s}=58 GeV

The polarization of tau leptons in the reaction e+ e- --> tau+ tau- has been measured using a e+e- collider, TRISTAN, at the center-of-mass energy of 58 GeV. From the kinematical distributions of daughter particles in tau --> e nu nu-bar, mu nu nu-bar, rho nu or pi(K) nu decays, the average polarization of tau- and its forward-backward asymmetry have been evaluated to be 0.012 +- 0.058 and 0.029 +- 0.057, respectively.Comment: 18 pages, 5 figure