Phosphorus uptake and utilization efficiency in West African pearl millet inbred lines

Pearl millet [Pennisetum glaucum (L.) R. Br] production on the acid sandy Sahelian soils in West Africa (WA) is severely limited by low plant-available phosphorus (P) in addition to erratic rainfall. We sought to examine the genetic variability for P uptake and P utilization efficiency in 180 WA pearl millet inbred lines or subsets thereof under low (LP) and high P (HP) conditions in one field and two pot experiments, determine the relationships among the measured traits and grain yield under field conditions at three other independent WA sites, and identify potential secondary selection traits for improving grain yield under LP. We observed genetic variation for P uptake and utilization in both seedling and mature plants. P utilization efficiency increased under LP conditions. Total P uptake was more important for grain production than P utilization under LP field conditions (r = 0.57*** vs r = 0.30***). The estimated response to indirect selection was positive for most of the measured morphological and P-efficiency parameters. We conclude that both seedling and mature plant traits are potentially useful as secondary traits in selection of pearl millet for low-P adaptation. These results should be validated using heterozygous pearl millet genetic materials. Ultimately, pearl millet breeding activities for low P tolerance in WA should be integrated with other system-oriented research such as nutrient cycling, intercropping or rotations with legumes, better crop-tree-livestock integration, and modest applications of locally available rock phosphate

Pearl Millet Inbred and Testcross Performance under Low Phosphorus in West Africa

Pearl millet [Pennisetum glaucum (L.) R. Br] is a food security crop for millions living in drylands of Africa and Asia. Its production on acid sandy soils of the Sahel is limited by erratic rainfall and poor soil fertility, especially low P soils. We sought to elucidate the genetic variation in West and Central African landrace-derived inbred lines for grain yield under low P conditions, to determine their performance as inbred lines per se and in hybrid combinations, and to determine quantitative-genetic parameters to derive an appropriate breeding strategy to enhance grain yield under low P conditions. We evaluated a total of 155 landrace-derived inbred lines as well as their testcrosses in four locations during two years under two treatments, high P (HP; with P fertilization) and low P (LP; without P fertilization). Results revealed significant effects for genotypes, P-level, genotype × P-level, as well as genotype × environment interactions. Grain yield reductions under LP treatment ranged from 7.9 to 35.5%, and 11.2 to 60.9% for inbred lines and testcrosses respectively, with positive midparent heterosis averaging 43.5% under LP. We conclude that direct selection of testcrosses under LP is more effective and that indirect selection for testross performance from inbred line performance is not desirable

Breeding schemes: what are they, how to formalize them, and how to improve them?

Open Access Journal; Published online: 21 Jan 2022Formalized breeding schemes are a key component of breeding program design and a gateway to conducting plant breeding as a quantitative process. Unfortunately, breeding schemes are rarely defined, expressed in a quantifiable format, or stored in a database. Furthermore, the continuous review and improvement of breeding schemes is not routinely conducted in many breeding programs. Given the rapid development of novel breeding methodologies, it is important to adopt a philosophy of continuous improvement regarding breeding scheme design. Here, we discuss terms and definitions that are relevant to formalizing breeding pipelines, market segments and breeding schemes, and we present a software tool, Breeding Pipeline Manager, that can be used to formalize and continuously improve breeding schemes. In addition, we detail the use of continuous improvement methods and tools such as genetic simulation through a case study in the International Institute of Tropical Agriculture (IITA) Cassava east-Africa pipeline. We successfully deploy these tools and methods to optimize the program size as well as allocation of resources to the number of parents used, number of crosses made, and number of progeny produced. We propose a structured approach to improve breeding schemes which will help to sustain the rates of response to selection and help to deliver better products to farmers and consumers

Towards understanding the traits contributing to performance of pearl millet open-pollinated varieties in phosphorus-limited environments of West Africa

Aims Pearl millet [Pennisetum glaucum (L.) R. Br.] open-pollinated varieties, which are the predominant cultivars, have never been systematically evaluated for adaptation to low-soil phosphorus (P), a major constraint on pearl millet production in West Africa (WA). Methods We evaluated grain yield (GY), flowering time (FLO), harvest index (HI), and residual grain yields (RGY) of 102 open-pollinated varieties from WA under low-P (−P) and high-P (+P) field conditions in six environments of WA. In addition, PE-related traits of the varieties were evaluated at early growth stage in a pot experiment. Results Significant genetic variation was observed for GY, FLO, HI and PE-related traits. P-efficient varieties had higher yield under −P conditions. Varietal performance under −P varied across environments depending on FLO, relative flowering delay under −P (FD) and RGY measured in the field. Low-P-susceptible varieties had higher FLO, lower HI than low-P-tolerant varieties. Response to direct selection under −P field conditions was 20.1 g m−2, whereas indirect selection response under +P was 16.3 g m−2. Conclusions Selection under −P field conditions while taking into account seasonal variations for FLO, FD and PE is expected to be important for improving GY specifically targeting −P environments in WA

Association analysis of low-phosphorus tolerance in West African pearl millet using DArT markers

Pearl millet [Pennisetum glaucum (L.) R. Br.] is a food security crop in the harshest agricultural regions of the world. While low soil phosphorus (P) availability is a big constraint on its production, especially in West Africa (WA), information on genomic regions responsible for low-P tolerance in pearl millet is generally lacking. We present the first report on genetic polymorphisms underlying several plant P-related parameters, flowering time (FLO) and grain yield (GY) under P-limiting conditions based on 285 diversity array technology markers and 151 West African pearl millet inbred lines phenotyped in six environments in WA under both high-P and low-P conditions. Nine markers were significantly associated with P-related traits, nine markers were associated with FLO, whereas 13 markers were associated with GY each explaining between 5.5 and 15.9 % of the observed variation. Both constitutive and adaptive associations were observed for FLO and GY, with markers PgPb11603 and PgPb12954 being associated with the most stable effects on FLO and GY, respectively, across locations. There were a few shared polymorphisms between traits, especially P-efficiency-related traits and GY, implying possible colocation of genomic regions responsible for these traits. Our findings help bridge the gap between quantitative and molecular methods of studying complex traits like low-P tolerance in WA. However, validation of these markers is necessary to determine their potential applicability in marker-assisted selection programs targeting low-P environments, which are especially important in WA where resource-poor farmers are expected to be the hardest hit by the approaching global P crisis

Factors driving cereal response to fertilizer microdosing in sub‐Saharan Africa: A meta‐analysis

Fertilizer microdosing (FM) is being promoted in sub-Saharan Africa (SSA) to boost crop productivity on smallholder farms. However, yield response variability is a barrier to adoption. We conducted a meta-analysis to analyze the variability in cereal crop yield response to FM and to determine the main factors associated with this variability. Thirty publications pertaining to millet [Pennisetum glaucum (L.) R. Br.], sorghum (Sorghum bicolor L. Moench) or maize (Zea mays L.) were assessed. Factors analyzed were crop type, rainfall, soil texture, type and rate of fertilizer, and complementary practices. On average, FM improved millet, sorghum and maize crop yields by 68%. Yield response tended to increase with increasing rainfall and the largest yield gains were observed in medium-textured soils (81%), as compared to light (61%) and heavy-textured soils (30%). The combined application of N and P performed better than either element alone. Crop response tended to increase with increasing rates of N. In the case of P, this was true only on light textured-soils. On medium-textured soils, the response appeared independent of the rate of P. There was a synergetic effect of water conservation measures on the performance of FM, while combining FM with organic matter (OM) amendments decreased its performance. Results highlighted major trends in cereal crop response to FM that could be used to prioritize target areas. However, these may require additional, site-specific field experiments, especially for factors for which little data is currently available

Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

Sweetpotato [Ipomoea batatas (L.) Lam.] is a globally important staple food crop, especially for sub-Saharan Africa. Agronomic improvement of sweetpotato has lagged behind other major food crops due to a lack of genomic and genetic resources and inherent challenges in breeding a heterozygous, clonally propagated polyploid. Here, we report the genome sequences of its two diploid relatives, I. trifida and I. triloba, and show that these high-quality genome assemblies are robust references for hexaploid sweetpotato. Comparative and phylogenetic analyses reveal insights into the ancient whole-genome triplication history of Ipomoea and evolutionary relationships within the Batatas complex. Using resequencing data from 16 genotypes widely used in African breeding programs, genes and alleles associated with carotenoid biosynthesis in storage roots are identified, which may enable efficient breeding of varieties with high provitamin A content. These resources will facilitate genome-enabled breeding in this important food security crop