Optimal measurements for quantum spatial superresolution

We construct optimal measurements, achieving the ultimate precision predicted by quantum theory, for the simultaneous estimation of centroid, separation, and relative intensities of two incoherent point sources using a linear optical system. We discuss the physical feasibility of the scheme, which could pave the way for future practical implementations of quantum inspired imaging.Comment: 7 pages. 3 color figures. Title change

Adaptive compressive tomography: a numerical study

We perform several numerical studies for our recently published adaptive compressive tomography scheme [D. Ahn et al. Phys. Rev. Lett. 122, 100404 (2019)], which significantly reduces the number of measurement settings to unambiguously reconstruct any rank-deficient state without any a priori knowledge besides its dimension. We show that both entangled and product bases chosen by our adaptive scheme perform comparably well with recently-known compressed-sensing element-probing measurements, and also beat random measurement bases for low-rank quantum states. We also numerically conjecture asymptotic scaling behaviors for this number as a function of the state rank for our adaptive schemes. These scaling formulas appear to be independent of the Hilbert space dimension. As a natural development, we establish a faster hybrid compressive scheme that first chooses random bases, and later adaptive bases as the scheme progresses. As an epilogue, we reiterate important elements of informational completeness for our adaptive scheme.Comment: 12 pages, 12 figure

Multiscale Bone Remodelling with Spatial P Systems

Many biological phenomena are inherently multiscale, i.e. they are characterized by interactions involving different spatial and temporal scales simultaneously. Though several approaches have been proposed to provide "multilayer" models, only Complex Automata, derived from Cellular Automata, naturally embed spatial information and realize multiscaling with well-established inter-scale integration schemas. Spatial P systems, a variant of P systems in which a more geometric concept of space has been added, have several characteristics in common with Cellular Automata. We propose such a formalism as a basis to rephrase the Complex Automata multiscaling approach and, in this perspective, provide a 2-scale Spatial P system describing bone remodelling. The proposed model not only results to be highly faithful and expressive in a multiscale scenario, but also highlights the need of a deep and formal expressiveness study involving Complex Automata, Spatial P systems and other promising multiscale approaches, such as our shape-based one already resulted to be highly faithful.Comment: In Proceedings MeCBIC 2010, arXiv:1011.005

Computational Modeling for the Activation Cycle of G-proteins by G-protein-coupled Receptors

In this paper, we survey five different computational modeling methods. For comparison, we use the activation cycle of G-proteins that regulate cellular signaling events downstream of G-protein-coupled receptors (GPCRs) as a driving example. Starting from an existing Ordinary Differential Equations (ODEs) model, we implement the G-protein cycle in the stochastic Pi-calculus using SPiM, as Petri-nets using Cell Illustrator, in the Kappa Language using Cellucidate, and in Bio-PEPA using the Bio-PEPA eclipse plug in. We also provide a high-level notation to abstract away from communication primitives that may be unfamiliar to the average biologist, and we show how to translate high-level programs into stochastic Pi-calculus processes and chemical reactions.Comment: In Proceedings MeCBIC 2010, arXiv:1011.005

Lumpability Abstractions of Rule-based Systems

The induction of a signaling pathway is characterized by transient complex formation and mutual posttranslational modification of proteins. To faithfully capture this combinatorial process in a mathematical model is an important challenge in systems biology. Exploiting the limited context on which most binding and modification events are conditioned, attempts have been made to reduce the combinatorial complexity by quotienting the reachable set of molecular species, into species aggregates while preserving the deterministic semantics of the thermodynamic limit. Recently we proposed a quotienting that also preserves the stochastic semantics and that is complete in the sense that the semantics of individual species can be recovered from the aggregate semantics. In this paper we prove that this quotienting yields a sufficient condition for weak lumpability and that it gives rise to a backward Markov bisimulation between the original and aggregated transition system. We illustrate the framework on a case study of the EGF/insulin receptor crosstalk.Comment: In Proceedings MeCBIC 2010, arXiv:1011.005

Axial superlocalization with vortex beams

Improving axial resolution is of paramount importance for three-dimensional optical imaging systems. Here, we investigate the ultimate precision in axial localization using vortex beams. For Laguerre-Gauss beams, this limit can be achieved with just an intensity scan. The same is not true for superpositions of Laguerre-Gauss beams, in particular for those with intensity profiles that rotate on defocusing. Microscopy methods based on rotating vortex beams may thus benefit from replacing traditional intensity sensors with advanced mode-sorting techniques

Neural-network quantum state tomography

We revisit the application of neural networks techniques to quantum state tomography. We confirm that the positivity constraint can be successfully implemented with trained networks that convert outputs from standard feed-forward neural networks to valid descriptions of quantum states. Any standard neural-network architecture can be adapted with our method. Our results open possibilities to use state-of-the-art deep-learning methods for quantum state reconstruction under various types of noise.Comment: 8 pages, 4 color figures. Comments are most welcom

Intensity-based axial localization at the quantum limit

We derive fundamental precision bounds for single-point axial localization. For Gaussian beams, this ultimate limit can be achieved with a single intensity scan, provided the camera is placed at one of two optimal transverse detection planes. Hence, for axial localization there is no need of more complicated detection schemes. The theory is verified with an experimental demonstration of axial resolution 3 orders of magnitude below the classical depth of focus

Enhancing axial localization with wavefront control

Enhancing the ability to resolve axial details is crucial in three-dimensional optical imaging. We provide experimental evidence showcasing the ultimate precision achievable in axial localization using vortex beams. For Laguerre-Gauss (LG) beams, this remarkable limit can be attained with just a single intensity scan. This proof-of-principle demonstrates that microscopy techniques based on LG vortex beams can potentially benefit from the introduced quantum-inspired superresolution protocol.Comment: 10 pages, 6 figures. Comments welcom