The CMS Tracker Readout Front End Driver

The Front End Driver, FED, is a 9U 400mm VME64x card designed for reading out the Compact Muon Solenoid, CMS, silicon tracker signals transmitted by the APV25 analogue pipeline Application Specific Integrated Circuits. The FED receives the signals via 96 optical fibers at a total input rate of 3.4 GB/sec. The signals are digitized and processed by applying algorithms for pedestal and common mode noise subtraction. Algorithms that search for clusters of hits are used to further reduce the input rate. Only the cluster data along with trigger information of the event are transmitted to the CMS data acquisition system using the S-LINK64 protocol at a maximum rate of 400 MB/sec. All data processing algorithms on the FED are executed in large on-board Field Programmable Gate Arrays. Results on the design, performance, testing and quality control of the FED are presented and discussed

Oxygen dependency of mitochondrial metabolism indicates outcome of newborn brain injury

There is a need for a method of real-time assessment of brain metabolism during neonatal hypoxic-ischaemic encephalopathy (HIE). We have used broadband near-infrared spectroscopy (NIRS) to monitor cerebral oxygenation and metabolic changes in 50 neonates with HIE undergoing therapeutic hypothermia treatment. In 24 neonates, 54 episodes of spontaneous decreases in peripheral oxygen saturation (desaturations) were recorded between 6 and 81 h after birth. We observed differences in the cerebral metabolic responses to these episodes that were related to the predicted outcome of the injury, as determined by subsequent magnetic resonance spectroscopy derived lactate/N-acetyl-aspartate. We demonstrated that a strong relationship between cerebral metabolism (broadband NIRS-measured cytochrome-c-oxidase (CCO)) and cerebral oxygenation was associated with unfavourable outcome; this is likely to be due to a lower cerebral metabolic rate and mitochondrial dysfunction in severe encephalopathy. Specifically, a decrease in the brain tissue oxidation state of CCO greater than 0.06 µM per 1 µM brain haemoglobin oxygenation drop was able to predict the outcome with 64% sensitivity and 79% specificity (receiver operating characteristic area under the curve = 0.73). With further work on the implementation of this methodology, broadband NIRS has the potential to provide an early, cotside, non-invasive, clinically relevant metabolic marker of perinatal hypoxic-ischaemic injury

Square-tiled cyclic covers

A cyclic cover of the complex projective line branched at four appropriate points has a natural structure of a square-tiled surface. We describe the combinatorics of such a square-tiled surface, the geometry of the corresponding Teichm\"uller curve, and compute the Lyapunov exponents of the determinant bundle over the Teichm\"uller curve with respect to the geodesic flow. This paper includes a new example (announced by G. Forni and C. Matheus in \cite{Forni:Matheus}) of a Teichm\"uller curve of a square-tiled cyclic cover in a stratum of Abelian differentials in genus four with a maximally degenerate Kontsevich--Zorich spectrum (the only known example found previously by Forni in genus three also corresponds to a square-tiled cyclic cover \cite{ForniSurvey}). We present several new examples of Teichm\"uller curves in strata of holomorphic and meromorphic quadratic differentials with maximally degenerate Kontsevich--Zorich spectrum. Presumably, these examples cover all possible Teichm\"uller curves with maximally degenerate spectrum. We prove that this is indeed the case within the class of square-tiled cyclic covers.Comment: 34 pages, 6 figures. Final version incorporating referees comments. In particular, a gap in the previous version was corrected. This file uses the journal's class file (jmd.cls), so that it is very similar to published versio

Inhaled 45-50% argon augments hypothermic brain protection in a piglet model of perinatal asphyxia

Cooling to 33.5 °C in babies with neonatal encephalopathy significantly reduces death and disability, however additional therapies are needed to maximize brain protection. Following hypoxia–ischemia we assessed whether inhaled 45–50% Argon from 2–26 h augmented hypothermia neuroprotection in a neonatal piglet model, using MRS and aEEG, which predict outcome in babies with neonatal encephalopathy, and immunohistochemistry. Following cerebral hypoxia–ischemia, 20 Newborn male Large White piglets < 40 h were randomized to: (i) Cooling (33 °C) from 2–26 h (n = 10); or (ii) Cooling and inhaled 45–50% Argon (Cooling + Argon) from 2–26 h (n = 8). Whole-brain phosphorus-31 and regional proton MRS were acquired at baseline, 24 and 48 h after hypoxia–ischemia. EEG was monitored. At 48 h after hypoxia–ischemia, cell death (TUNEL) was evaluated over 7 brain regions. There were no differences in body weight, duration of hypoxia–ischemia or insult severity; throughout the study there were no differences in heart rate, arterial blood pressure, blood biochemistry and inotrope support. Two piglets in the Cooling + Argon group were excluded. Comparing Cooling + Argon with Cooling there was preservation of whole-brain MRS ATP and PCr/Pi at 48 h after hypoxia–ischemia (p < 0.001 for both) and lower 1H MRS lactate/N acetyl aspartate in white (p = 0.03 and 0.04) but not gray matter at 24 and 48 h. EEG background recovery was faster (p < 0.01) with Cooling + Argon. An overall difference between average cell-death of Cooling versus Cooling + Argon was observed (p < 0.01); estimated cells per mm2 were 23.9 points lower (95% C.I. 7.3–40.5) for the Cooling + Argon versus Cooling. Inhaled 45–50% Argon from 2–26 h augmented hypothermic protection at 48 h after hypoxia–ischemia shown by improved brain energy metabolism on MRS, faster EEG recovery and reduced cell death on TUNEL. Argon may provide a cheap and practical therapy to augment cooling for neonatal encephalopathy

The effect of management for red grouse shooting on the population density of breeding birds on heather-dominated moorland.

Summary 1. Breeding birds, vegetation and moorland management were surveyed in 320 1-km squares on 122 estates in upland areas of eastern Scotland and northern England where red grouse shooting is a widespread land use. We assessed whether population densities of eleven species of breeding birds differed between heather-dominated moorland managed for red grouse shooting and other moorland with similar vegetation. 2. We classified estates which had a full-time equivalent moorland gamekeeper as grouse moors. The mean density of red grouse shot per year was four times higher and the mean density of gamekeepers was three times higher on grouse moors than on other moors. Rotational burning of ground vegetation covered a 34% larger area on grouse moors than on other moors. 3. Selection of heather-dominated squares resulted in similar composition of vegetation on grouse moors and other moors (about 76% heath, 12% grass, 8% bog, 2% flush and &lt;1% bracken on both types). However, grouse moors tended to have less tall vegetation than other moors and differed significantly in some other characteristics of the vegetation, topography and soil type. 4. Densities of breeding golden plover and lapwing were five times higher and those of red grouse and curlew were twice as high on grouse moors as on other moors, whilst meadow pipit, skylark, whinchat and carrion/hooded crow were 1.5, 2.3, 3.9 and 3.1 times less abundant, respectively, on grouse moors. The differences in density between moorland types remained significant (P &lt; 0.001) 2. Grouse moor management and breeding birds for golden plover and crow and approached significance (P &lt; 0.10) for lapwing and meadow pipit after allowing for variation among regions. 5. We used Poisson regression models to relate bird density to vegetation cover, topography, climate and soil type. After adjusting for significant effects of these habitat variables, significant differences in bird density between the two moorland types remained for six species, though their magnitude was reduced. 6. Correlations of adjusted bird density with measures of different aspects of grouse moor management provided evidence of a possible positive influence of predator control (assessed using crow density) on red grouse, golden plover and lapwing. The control of crows by gamekeepers is the most likely cause of the low densities of crows on grouse moors. There was evidence of a positive effect of heather burning on the density of red grouse and golden plover and a negative effect on meadow pipit. Multiple Poisson regression indicated that predator control and heather burning had significant separate effects on red grouse density. Significant relationships between adjusted breeding bird densities and the abundance of raptors and ravens were few and predominantly positive. 7. The results provide correlative evidence that moorland management benefits some breeding bird species and disbenefits others in ways that cannot readily be explained away as effects of differences in vegetation type or topography. However, experimental manipulations of numbers of some predators and heather burning are required to test these findings

From Social Data Mining to Forecasting Socio-Economic Crisis

Socio-economic data mining has a great potential in terms of gaining a better understanding of problems that our economy and society are facing, such as financial instability, shortages of resources, or conflicts. Without large-scale data mining, progress in these areas seems hard or impossible. Therefore, a suitable, distributed data mining infrastructure and research centers should be built in Europe. It also appears appropriate to build a network of Crisis Observatories. They can be imagined as laboratories devoted to the gathering and processing of enormous volumes of data on both natural systems such as the Earth and its ecosystem, as well as on human techno-socio-economic systems, so as to gain early warnings of impending events. Reality mining provides the chance to adapt more quickly and more accurately to changing situations. Further opportunities arise by individually customized services, which however should be provided in a privacy-respecting way. This requires the development of novel ICT (such as a self- organizing Web), but most likely new legal regulations and suitable institutions as well. As long as such regulations are lacking on a world-wide scale, it is in the public interest that scientists explore what can be done with the huge data available. Big data do have the potential to change or even threaten democratic societies. The same applies to sudden and large-scale failures of ICT systems. Therefore, dealing with data must be done with a large degree of responsibility and care. Self-interests of individuals, companies or institutions have limits, where the public interest is affected, and public interest is not a sufficient justification to violate human rights of individuals. Privacy is a high good, as confidentiality is, and damaging it would have serious side effects for society.Comment: 65 pages, 1 figure, Visioneer White Paper, see http://www.visioneer.ethz.c

Searching for New Physics Through AMO Precision Measurements

We briefly review recent experiments in atomic, molecular, and optical physics using precision measurements to search for physics beyond the Standard Model. We consider three main categories of experiments: searches for changes in fundamental constants, measurements of the anomalous magnetic moment of the electron, and searches for an electric dipole moment of the electron.Comment: Prepared for Comments on AMO Physics at Physica Script

Sum of Lyapunov exponents of the Hodge bundle with respect to the Teichmuller geodesic flow

We compute the sum of the positive Lyapunov exponents of the Hodge bundle with respect to the Teichmuller geodesic flow. The computation is based on the analytic Riemann-Roch Theorem and uses a comparison of determinants of flat and hyperbolic Laplacians when the underlying Riemann surface degenerates.Comment: Minor corrections. To appear in Publications mathematiques de l'IHE

Recent Results on the Performance of the CMS Tracker Readout System

The CMS Silicon Tracker comprises a complicated set of hardware and software components that have been thoroughly tested at CERN before final integration of the Tracker. A vertical slice of the full readout chain has been operated under near-final conditions. In the absence of the tracker front-end modules, simulated events have been created within the FED (Front End Driver) and used to test the readout reliability and efficiency of the final DAQ (Data Acquisition). The data are sent over the S-Link 64 bit links to the FRL(Fast Readout Link) modules at rates in excess of 200 MBytes/s per FED depending on setup and conditions. The current tracker DAQ is fully based on the CMS communication and acquisition tool XDAQ. This paper discusses setup and results of a vertical slice of the full Tracker final readout system comprising 2 full crates of FEDs, 30 in total, read out through 1 full crate of final FRL modules. This test is to complement previous tests done at Imperial College[3] taking them to the next level in order to prove that a complete crate of FRLs using the final DAQ system, including all subcomponents of the final system both software and hardware with the exception of the detector modules themselves, is capable of sustained readout at the desired rates and occupancy of the CMS Tracker. Simulated data are created with varying hit occupancy (1-10%) and Poisson distributed trigger rates (<200KHz) and the resulting behaviour of the system is recorded. Data illustrating the performance of the system and data readout are presented