Supervision and Scholarly Writing: Writing to Learn - Learning to Write

This paper describes an action research project on postgraduate students’ scholarly writing in which I employed reflective approaches to examine and enhance my postgraduate supervisory practice. My reflections on three distinct cycles of supervision illustrate a shift in thinking about scholarly writing and an evolving understanding of how to support postgraduate students’ writing. These understandings provide the foundation for a future-oriented fourth cycle of supervisory practice, which is characterised by three principles, namely the empowerment of students as writers, the technological context of contemporary writing, and ethical issues in writing

Easing into the Academy: Using Technology to Foster Cross-Institutional Critical Friendships

This article addresses the ways in which early career teacher educators can support each other as they enter the academic community. By utilizing technology as an instrument to engage in a cross-country critical friendship, the authors were able to engage in a dialogue that grew out of mutual interests and concerns. Through critical reflection, they were able to address the question: How can we, two early-career teacher educators, push ourselves and one another to more critically examine our teaching practices? In doing so, each “new educator” grew more confident in claiming one\u27s voice as a sustainable critical friendship emerged

Edge localized mode control with an edge resonant magnetic perturbation

A low amplitude (δbr∕BT=1 part in 5000) edge resonantmagnetic field perturbation with toroidalmode number n=3 and poloidal mode numbers between 8 and 15 has been used to suppress most large type I edge localized modes(ELMs) without degrading core plasma confinement. ELMs have been suppressed for periods of up to 8.6 energy confinement times when the edge safety factor q95 is between 3.5 and 4. The large ELMs are replaced by packets of events (possibly type II ELMs) with small amplitude, narrow radial extent, and a higher level of magnetic field and density fluctuations, creating a duty cycle with long “active” intervals of high transport and short “quiet” intervals of low transport. The increased transport associated with these events is less impulsive and slows the recovery of the pedestal profiles to the values reached just before the large ELMs without the n=3 perturbation. Changing the toroidal phase of the perturbation by 60° with respect to the best ELM suppression case reduces the ELM amplitude and frequency by factors of 2–3 in the divertor, produces a more stochastic response in the H-mode pedestal profiles, and displays similar increases in small scale events, although significant numbers of large ELMs survive. In contrast to the best ELM suppression case where the type I ELMs are also suppressed on the outboard midplane, the midplane recycling increases until individual ELMs are no longer discernable. The ELM response depends on the toroidal phase of the applied perturbation because intrinsic error fields make the target plasma nonaxisymmetric, and suggests that at least some of the variation in ELM behavior in a single device or among different devices is due to differences in the intrinsic error fields in these devices. These results indicate that ELMs can be suppressed by small edge resonantmagnetic field perturbations. Extrapolation to next-step burning plasma devices will require extending the regime of operation to lower collisionality and understanding the physical mechanism responsible for the ELM suppression.This work was funded by the U.S. Department of Energy under Grant Nos. DE-FC02-04ER54698, DE-FG02- 04ER54758, DE-FG03-01ER54615, W-7405-ENG-48, DEFG03-96ER54373, DE-FG02-89ER53297, DE-AC05- 00OR22725, and DE-AC04-94AL85000

Hidden in the Middle : Culture, Value and Reward in Bioinformatics

Bioinformatics - the so-called shotgun marriage between biology and computer science - is an interdiscipline. Despite interdisciplinarity being seen as a virtue, for having the capacity to solve complex problems and foster innovation, it has the potential to place projects and people in anomalous categories. For example, valorised 'outputs' in academia are often defined and rewarded by discipline. Bioinformatics, as an interdisciplinary bricolage, incorporates experts from various disciplinary cultures with their own distinct ways of working. Perceived problems of interdisciplinarity include difficulties of making explicit knowledge that is practical, theoretical, or cognitive. But successful interdisciplinary research also depends on an understanding of disciplinary cultures and value systems, often only tacitly understood by members of the communities in question. In bioinformatics, the 'parent' disciplines have different value systems; for example, what is considered worthwhile research by computer scientists can be thought of as trivial by biologists, and vice versa. This paper concentrates on the problems of reward and recognition described by scientists working in academic bioinformatics in the United Kingdom. We highlight problems that are a consequence of its cross-cultural make-up, recognising that the mismatches in knowledge in this borderland take place not just at the level of the practical, theoretical, or epistemological, but also at the cultural level too. The trend in big, interdisciplinary science is towards multiple authors on a single paper; in bioinformatics this has created hybrid or fractional scientists who find they are being positioned not just in-between established disciplines but also in-between as middle authors or, worse still, left off papers altogether

The cancer translational research informatics platform

<p>Abstract</p> <p>Background</p> <p>Despite the pressing need for the creation of applications that facilitate the aggregation of clinical and molecular data, most current applications are proprietary and lack the necessary compliance with standards that would allow for cross-institutional data exchange. In line with its mission of accelerating research discoveries and improving patient outcomes by linking networks of researchers, physicians, and patients focused on cancer research, caBIG (cancer Biomedical Informatics Grid™) has sponsored the creation of the caTRIP (Cancer Translational Research Informatics Platform) tool, with the purpose of aggregating clinical and molecular data in a repository that is user-friendly, easily accessible, as well as compliant with regulatory requirements of privacy and security.</p> <p>Results</p> <p>caTRIP has been developed as an N-tier architecture, with three primary tiers: domain services, the distributed query engine, and the graphical user interface, primarily making use of the caGrid infrastructure to ensure compatibility with other tools currently developed by caBIG. The application interface was designed so that users can construct queries using either the Simple Interface via drop-down menus or the Advanced Interface for more sophisticated searching strategies to using drag-and-drop. Furthermore, the application addresses the security concerns of authentication, authorization, and delegation, as well as an automated honest broker service for deidentifying data.</p> <p>Conclusion</p> <p>Currently being deployed at Duke University and a few other centers, we expect that caTRIP will make a significant contribution to further the development of translational research through the facilitation of its data exchange and storage processes.</p

Mitigation of plasma-wall interactions with low-Z powders in DIII-D high confinement plasmas

Experiments with low-Z powder injection in DIII-D high confinement discharges demonstrated increased divertor dissipation and detachment while maintaining good core energy confinement. Lithium (Li), boron (B), and boron nitride (BN) powders were injected in high-confinement mode plasmas ($I_p=$1 MA, $B_t=$2 T, $P_{NB}=$6 MW, $\langle n_e\rangle=3.6-5.0\cdot10^{19}$ m$^{-3}$) into the upper small-angle slot (SAS) divertor for 2-s intervals at constant rates of 3-204 mg/s. The multi-species BN powders at a rate of 54 mg/s showed the most substantial increase in divertor neutral compression by more than an order of magnitude and lasting detachment with minor degradation of the stored magnetic energy $W_{mhd}$ by 5%. Rates of 204 mg/s of boron nitride powder further reduce ELM-fluxes on the divertor but also cause a drop in confinement performance by 24% due to the onset of an $n=2$ tearing mode. The application of powders also showed a substantial improvement of wall conditions manifesting in reduced wall fueling source and intrinsic carbon and oxygen content in response to the cumulative injection of non-recycling materials. The results suggest that low-Z powder injection, including mixed element compounds, is a promising new core-edge compatible technique that simultaneously enables divertor detachment and improves wall conditions during high confinement operation

Divertor characterization experiments

Recent DIII-D experiments with enhanced Scrape-off Layer (SOL) diagnostics permit detailed characterization of the SOL and divertor plasma under various operating conditions. We observe two distinct plasma modes: attached and detached divertor plasmas. Detached plasmas are characterized by plate temperatures of only 1 to 2 eV. Simulation of detached plasmas using the UEDGE code indicate that volume recombination and charge exchange play an important role in achieving detachment. When the power delivered to the plate is reduced by enhanced radiation to the point that recycled neutrals can no longer be efficiently ionized, the plate temperature drops from around 10 eV to 1-2 eV. The low temperature region extends further off the plate as the power continues to be reduced, and charge exchange processes remove momentum, reducing the plasma flow. Volume recombination becomes important when the plasma flow is reduced sufficiently to permit recombination to compete with flow to the plate