Comparative ecotoxicity of three polluted industrial soils for the Collembola Folsomia candida

We tried to quantify the ecotoxicity of three industrial soil samples contaminated by different metals, using the Collembolan Folsomia candida as a biological model and mortality, growth and reproduction as parameters. The observed ecotoxicities are rather normal for the first such soil sample (aluminum factory) but are high for the second sample (ore treatment) and relatively low for the third one (zinc factory) considering its high metal concentrations. For these last two soil samples, an unusual ecotoxicity plotting is observed: two high ecotoxicity recordings fit with a low and high percentage of polluted soil to non-polluted soil and noticeably lower ecotoxicity recordings are observed between them. Chemical analyses of metals in pore waters show that arsenic probably explains part of such an unusual ecotoxicity curve. Otherwise, mortality and growth of the animals are less sensitive parameters than reproduction. Our experiments show that the results of the ecotoxicological assays of polluted soils are complex and difficult to interpre

Determining cadmium critical concentrations in natural soils by assessing Collembola mortality, reproduction and growth

The toxicity of cadmium for the Collembola Folsomia candida was studied by determining the effects of increasing Cd concentrations on growth, survival and reproduction in three cultivated and forested soils with different pH (4.5–8.2) and organic matter content (1.6–16.5%). The Cd concentration in soil CaCl2 exchangeable fraction, in soil solution and in Collembola body was determined. At similar total soil concentrations, the Cd concentration in soil solutions strongly decreased with increasing pH. Reproduction was the most sensitive parameter. Low organic matter content was a limiting factor for reproduction. Effect of Cd on reproduction was better described by soil or body concentrations than by soil solution concentration. Values of EC50-Repro expressed on the basis of nominal soil concentration were 182, 111 and 107 μg g−1, respectively, for a carbonated cultivated soil (AU), an acid forested soil with high organic matter (EPC) and a circumneutral cultivated soil with low organic content (SV). Sensitivity to Cd was enhanced for low OM content and acidic pH. The effect of Cd on reproduction is not directly related to Cd concentration in soil solution for carbonated soil: a very low value is found for EC50-Repro (0.17) based on soil solution for the soil with the highest pH (AU; pH=8.2). Chronic toxicity cannot be predicted on the basis of soluble fractions. Critical concentrations were 8×10−5, 1.1, 0.3 μg mL−1, respectively, for AU, EPC and SV soils

Toxicity of Pb and of Pb/Cd combination on the springtail Folsomia candida in natural soils: Reproduction, growth and bioaccumulation as indicators

The toxicity of Pb and Cd+Pb was assessed on the Collembola F. candida in two cultivated soils (SV and AU) with low organic matter (OM) content and circumneutral to basic pH, and an acid forested soil (EPC) with high OM content. Collembola reproduction and growth as well as metal content in Collembola body, in soil, exchangeable fraction and soil solutions, pH and DOC were investigated. Pb and Cd+Pb were the highest in exchangeable fraction and soil solution of the acidic soils. Soil solution pH decreased after metal spiking in every soil due to metal adsorption, which was similar for Cd and the highest in AU for Pb. With increasing Pb and Cd+Pb, the most important reproduction decrease was in EPC soil. The LOEC for reproduction after metal addition was 2400 (Pb) and 200/2400 (Cd/Pb), 1200 and 100/1200, 300 and 100/1200 μg g−1 for AU, SV and EPC, respectively. The highest and the lowest Pb toxicity was observed for EPC and AU bulk soil, respectively. The metal in Collembola increased with increasing soil concentration, except in AU, but the decreasing BFsolution with increasing concentrations indicates a limited metal transfer to Collembola or an increased metal removal. Loading high Pb concentrations decreases Cd absorption by the Collembola, but the reverse was not true. The highest Pb toxicity in EPC can be explained by pH and OM content. Because of metal complexation, OM might have a protective role but its ingestion by Collembola lead to higher toxicity. Metal bioavailability in Collembola differs from soil solution indicating that soil solution is not sufficient to evaluate toxicity in soil organisms. The toxicity as a whole decreased when metals were combined, except for Pb in AU, due to adsorption competition between Cd and Pb on clay particles and OM sites in AU and EPC soils, respectively

Evolutionary systematic of three species of troglobitic beetles: electrophoretic and morphological evidence

International audienc

Landscape genetics of an endangered lemur (Propithecus tattersalli) within its entire fragmented range

Habitat fragmentation may strongly reduce individuals' dispersal among resource patches and hence influence population distribution and persistence. We studied the impact of landscape heterogeneity on the dispersal of the golden-crowned sifaka (Propithecus tattersalli), an endangered social lemur species living in a restricted and highly fragmented landscape. We combined spatial analysis and population genetics methods to describe population units and identify the environmental factors which best predict the rates and patterns of genetic differentiation within and between populations. We used non-invasive methods to genotype 230 individuals at 13 microsatellites in all the main forest fragments of its entire distribution area. Our analyses suggest that the Manankolana River and geographical distance are the primary structuring factors, while a national road crossing the region does not seem to impede gene flow. Altogether, our results are in agreement with a limited influence of forest habitat connectivity on gene flow patterns (except for North of the species' range), suggesting that dispersal is still possible today among most forest patches for this species. Within forest patches, we find that dispersal is mainly among neighbouring social groups, hence confirming previous behavioural observation

Arylamine N-Acetyltransferase 2 (NAT2) Genetic Diversity and Traditional Subsistence: A Worldwide Population Survey

Arylamine N-acetyltransferase 2 (NAT2) is involved in human physiological responses to a variety of xenobiotic compounds, including common therapeutic drugs and exogenous chemicals present in the diet and the environment. Many questions remain about the evolutionary mechanisms that have led to the high prevalence of slow acetylators in the human species. Evidence from recent surveys of NAT2 gene variation suggests that NAT2 slow-causing variants might have become targets of positive selection as a consequence of the shift in modes of subsistence and lifestyle in human populations in the last 10,000 years. We aimed to test more extensively the hypothesis that slow acetylation prevalence in humans is related to the subsistence strategy adopted by the past populations. To this end, published frequency data on the most relevant genetic variants of NAT2 were collected from 128 population samples (14,679 individuals) representing different subsistence modes and dietary habits, allowing a thorough analysis at both a worldwide and continent scale. A significantly higher prevalence of the slow acetylation phenotype was observed in populations practicing farming (45.4%) and herding (48.2%) as compared to populations mostly relying on hunting and gathering (22.4%) (P = 0.0007). This was closely mirrored by the frequency of the slow 590A variant that was found to occur at a three-fold higher frequency in food producers (25%) as compared to hunter-gatherers (8%). These findings are consistent with the hypothesis that the Neolithic transition to subsistence economies based on agricultural and pastoral resources modified the selective regime affecting the NAT2 acetylation pathway. Furthermore, the vast amount of data collected enabled us to provide a comprehensive and up-to-date description of NAT2 worldwide genetic diversity, thus building up a useful resource of frequency data for further studies interested in epidemiological or anthropological research questions involving NAT2

Genomic plasticity of the immune-related Mhc class I B region in macaque species

<p>Abstract</p> <p>Background</p> <p>In sharp contrast to humans and great apes, the expanded <it>Mhc</it>-<it>B </it>region of rhesus and cynomolgus macaques is characterized by the presence of differential numbers and unique combinations of polymorphic class I <it>B </it>genes per haplotype. The MIB microsatellite is closely linked to the single class I <it>B </it>gene in human and in some great apes studied. The physical map of the <it>Mhc </it>of a heterozygous rhesus monkey provides unique material to analyze MIB and <it>Mamu</it>-<it>B </it>copy number variation and then allows one to decipher the compound evolutionary history of this region in primate species.</p> <p>Results</p> <p><it>In silico </it>research pinpointed 12 MIB copies (duplicons), most of which are associated with expressed <it>B</it>-genes that cluster in a separate clade in the phylogenetic tree. Generic primers tested on homozygous rhesus and pedigreed cynomolgus macaques allowed the identification of eight to eleven MIB copies per individual. The number of MIB copies present per haplotype varies from a minimum of three to six in cynomolgus macaques and from five to eight copies in rhesus macaques. Phylogenetic analyses highlight a strong transpecific sharing of MIB duplicons. Using the physical map, we observed that, similar to MIB duplicons, highly divergent <it>Mamu</it>-<it>B </it>genes can be present on the same haplotype. Haplotype variation as reflected by the copy number variation of class I <it>B </it>loci is best explained by recombination events, which are found to occur between MIBs and <it>Mamu</it>-<it>B</it>.</p> <p>Conclusion</p> <p>The data suggest the existence of highly divergent MIB and <it>Mamu-B </it>lineages on a given haplotype, as well as variable MIB and <it>B </it>copy numbers and configurations, at least in rhesus macaque. Recombination seems to occur between MIB and <it>Mamu</it>-<it>B </it>loci, and the resulting haplotypic plasticity at the individual level may be a strategy to better cope with pathogens. Therefore, evolutionary inferences based on the multiplicated MIB loci but also other markers close to <it>B</it>-genes appear to be promising for the study of <it>B</it>-region organization and evolution in primates.</p

Comparative analysis of xenobiotic metabolising N-acetyltransferases from ten non-human primates as in vitro models of human homologues

Xenobiotic metabolising N-acetyltransferases (NATs) perform biotransformation of drugs and carcinogens. Human NAT1 is associated with endogenous metabolic pathways of cells and is a candidate drug target for cancer. Human NAT2 is a well-characterised polymorphic xenobiotic metabolising enzyme, modulating susceptibility to drug-induced toxicity. Human NATs are difficult to express to high purification yields, complicating large-scale production for high-throughput screens or use in sophisticated enzymology assays and crystallography. We undertake comparative functional investigation of the NAT homologues of ten non-human primates, to characterise their properties and evaluate their suitability as models of human NATs. Considering the amount of generated recombinant protein, the enzymatic activity and thermal stability, the NAT homologues of non-human primates are demonstrated to be a much more effective resource for in vitro studies compared with human NATs. Certain NAT homologues are proposed as better models, such as the NAT1 of macaques Macaca mulatta and M. sylvanus, the NAT2 of Erythrocebus patas, and both NAT proteins of the gibbon Nomascus gabriellae which show highest homology to human NATs. This comparative investigation will facilitate in vitro screens towards discovery and optimisation of candidate pharmaceutical compounds for human NAT isoenzymes, while enabling better understanding of NAT function and evolution in primates