20 research outputs found

    Dihydropteroate synthase mutations in Pneumocystis pneumonia: impact of applying different definitions of prophylaxis, mortality endpoints and mutant in a single cohort

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    Pneumocystis jirovecii dihydropteroate synthase (DHPS) gene mutations are well-reported. Although sulfa prophylaxis generally is associated with DHPS mutant infection, whether mutant infection is associated with poorer clinical outcomes is less clear. The differing definitions of sulfa prophylaxis and the different mortality endpoints used in these studies may be one explanation for the conflicting study results. Applying different definitions of prophylaxis, mortality endpoints and DHPS mutant to 301 HIV-infected patients with Pneumocystis pneumonia, we demonstrate that prophylaxis, irrespective of definition, increased the risk of infection with pure mutant (any prophylaxis: AOR 4.00, 95% CI: 1.83–8.76, p0.05). Future studies should standardize key variables associated with DHPS mutant infection as well as examine DHPS mutant subtypes (pure mutant vs. mixed infections) – perhaps even individual DHPS mutant genotypes – so that data can be pooled to better address this issue

    Positive psychology/ Baumgardner

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    xxi, p. 238: ill., ind., tab.; 29 c

    Virtualisation of Simple Scientific Data Objects

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    Virtualisation of Simple Scientific Data Objects.Capturing OAIS defined representation information in a standardised way is critical for the preservation and future reuse of scientific data. The structure of a scientific data object needs to be defined so that a future user can map the data bits to the actual scientific data. The semantics associated with the scientific data also needs to be defined so that the data can be understood and used by a user from the appropriate designated community. This presentation will show how simple scientific digital objects (tables, images etc.) can be described and "virtualised" by using representation information in the form of EAST file format descriptions (structure) and the corresponding DEDSL data dictionaries (semantics). It will also be shown that in some real life cases the EAST and DEDSL standards need to be extended so that they can fully describe the simple objects. Tools and APIs will be demonstrated that take the structure and semantic definitions for a simple scientific digital object and automatically read the data it contains and render it in the appropriate way

    Virtualisation of Simple Scientific Data Objects: Presentation - iPRES 2006 - Ithaca

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    Capturing OAIS defined representation information in a standardised way is critical for the preservation and future reuse of scientific data. The structure of a scientific data object needs to be defined so that a future user can map the data bits to the actual scientific data. The semantics associated with the scientific data also needs to be defined so that the data can be understood and used by a user from the appropriate designated community. This presentation will show how simple scientific digital objects (tables, images etc.) can be described and "virtualised" by using representation information in the form of EAST file format descriptions (structure) and the corresponding DEDSL data dictionaries (semantics). It will also be shown that in some real life cases the EAST and DEDSL standards need to be extended so that they can fully describe the simple objects. Tools and APIs will be demonstrated that take the structure and semantic definitions for a simple scientific digital object and automatically read the data it contains and render it in the appropriate way

    Fragments of the HIV-1 Tat protein specifically bind TAR RNA

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    Proteolytically produced carboxyl-terminal fragments of the human immunodeficiency virus type-1 (HIV-1) Tat protein that include a conserved region rich in arginine and lysine bind specifically to transactivation response RNA sequences (TAR). A chemically synthesized 14-residue peptide spanning the basic subdomain also recognizes TAR, identifying this subdomain as central for RNA interaction. TAR RNA forms a stable hairpin that includes a six-residue loop, a trinucleotide pyrimidine bulge, and extensive duplex structure. Competition and interference experiments show that the Tat-derived fragments bind to double-stranded RNA and interact specifically at the pyrimidine bulge and adjacent duplex of TAR

    HdH Light Automation Development

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    First Imaging of Coronal Mass Ejections in the Heliosphere Viewed from Outside the Sun Earth Line

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    We show for the first time images of solar coronal mass ejections (CMEs) viewed using the Heliospheric Imager (HI) instrument aboard the NASA STEREO spacecraft. The HI instruments are wide-angle imaging systems designed to detect CMEs in the heliosphere, in particular, for the first time, observing the propagation of such events along the Sun Earth line, that is, those directed towards Earth. At the time of writing the STEREO spacecraft are still close to the Earth and the full advantage of the HI dual-imaging has yet to be realised. However, even these early results show that despite severe technical challenges in their design and implementation, the HI instruments can successfully detect CMEs in the heliosphere, and this is an extremely important milestone for CME research. For the principal event being analysed here we demonstrate an ability to track a CME from the corona to over 40 degrees. The time altitude history shows a constant speed of ascent over at least the first 50 solar radii and some evidence for deceleration at distances of over 20 degrees. Comparisons of associated coronagraph data and the HI images show that the basic structure of the CME remains clearly intact as it propagates from the corona into the heliosphere. Extracting the CME signal requires a consideration of the F-coronal intensity distribution, which can be identified from the HI data. Thus we present the preliminary results on this measured F-coronal intensity and compare these to the modelled F-corona of Koutchmy and Lamy ( IAU Colloq. 85, 63, 1985). This analysis demonstrates that CME material some two orders of magnitude weaker than the F-corona can be detected; a specific example at 40 solar radii revealed CME intensities as low as 1.7×10[SUP]-14[/SUP] of the solar brightness. These observations herald a new era in CME research as we extend our capability for tracking, in particular, Earth-directed CMEs into the heliosphere
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