Use of novel sensors combining local positioning and acceleration to measure feeding behavior differences associated with lameness in dairy cattle

Time constraints for dairy farmers are an important factor contributing to the under-detection of lameness, resulting in delayed or missed treatment of lame cows within many commercial dairy herds. Hence, a need exists for flexible and affordable cow-based sensor systems capable of monitoring behaviors such as time spent feeding, which may be affected by the onset of lameness. In this study a novel neck-mounted mobile sensor system that combines local positioning and activity (acceleration) was tested and validated on a commercial UK dairy farm. Position and activity data were collected over 5 consecutive days for 19 high-yield dairy cows (10 lame, 9 non-lame) that formed a subset of a larger (120 cow) management group housed in a freestall barn. A decision tree algorithm that included sensor-recorded position and accelerometer data was developed to classify a cow as doing 1 of 3 categories of behavior: (1) feeding, (2) not feeding, and (3) out of pen for milking. For each classified behavior the mean number of bouts, the mean bout duration, and the mean total duration across all bouts was determined on a daily basis, and also separately for the time periods in between milking (morning = 0630–1300 h; afternoon = 1430–2100 h; night = 2230–0500 h). A comparative analysis of the classified cow behaviors was undertaken using a Welch -test with Benjamini-t Hochberg post-hoc correction under the null hypothesis of no differences in the number or duration of behavioral bouts between the 2 test groups of lame and nonlame cows. Analysis showed that mean total daily feeding duration was significantly lower for lame cows compared with non-lame cows. Behavior was also affected by time of day with significantly lower mean total duration of feeding and higher total duration of nonfeeding in the afternoons for lame cows compared with nonlame cows. The results demonstrate how sensors that measure both position and acceleration are capable of detecting differences in feeding behavior that may be associated with lameness. Such behavioral differences could be used in the development of predictive algorithms for the prompt detection of lameness as part of a commercially viable automated behavioral monitoring system

Wild birds respond to flockmate loss by increasing their social network associations to others

Understanding the consequences of losing individuals from wild populations is a current and pressing issue, yet how such loss influences the social behaviour of the remaining animals is largely unexplored. Through combining the automated tracking of winter flocks of over 500 wild great tits (Parus major) with removal experiments, we assessed how individuals’ social network positions responded to the loss of their social associates. We found that the extent of flockmate loss that individuals experienced correlated positively with subsequent increases in the number of their social associations, the average strength of their bonds and their overall connectedness within the social network (defined as summed edge weights). Increased social connectivity was not driven by general disturbance or changes in foraging behaviour, but by modifications to fine-scale social network connections in response to losing their associates. Therefore, the reduction in social connectedness expected by individual loss may be mitigated by increases in social associations between remaining individuals. Given that these findings demonstrate rapid adjustment of social network associations in response to the loss of previous social ties, future research should examine the generality of the compensatory adjustment of social relations in ways that maintain the structure of social organizationThe work was funded by an NERC studentship and EGI Research Fellowship to J.A.F. and grants from the ERC and BBSRC (AdG 250164; BB/L006081/1) to B.C.S

Limits on the gravity wave contribution to microwave anisotropies

We present limits on the fraction of large angle microwave anisotropies which could come from tensor perturbations. We use the COBE results as well as smaller scale CMB observations, measurements of galaxy correlations, abundances of galaxy clusters, and Lyman alpha absorption cloud statistics. Our aim is to provide conservative limits on the tensor-to-scalar ratio for standard inflationary models. For power-law inflation, for example, we find T/S<0.52 at 95% confidence, with a similar constraint for phi^p potentials. However, for models with tensor amplitude unrelated to the scalar spectral index it is still currently possible to have T/S>1.Comment: 23 pages, 7 figures, accepted for publication in Phys. Rev. D. Calculations extended to blue spectral index, Fig. 6 added, discussion of results expande

Is cosmology consistent?

We perform a detailed analysis of the latest CMB measurements (including BOOMERaNG, DASI, Maxima and CBI), both alone and jointly with other cosmological data sets involving, e.g., galaxy clustering and the Lyman Alpha Forest. We first address the question of whether the CMB data are internally consistent once calibration and beam uncertainties are taken into account, performing a series of statistical tests. With a few minor caveats, our answer is yes, and we compress all data into a single set of 24 bandpowers with associated covariance matrix and window functions. We then compute joint constraints on the 11 parameters of the ``standard'' adiabatic inflationary cosmological model. Out best fit model passes a series of physical consistency checks and agrees with essentially all currently available cosmological data. In addition to sharp constraints on the cosmic matter budget in good agreement with those of the BOOMERaNG, DASI and Maxima teams, we obtain a heaviest neutrino mass range 0.04-4.2 eV and the sharpest constraints to date on gravity waves which (together with preference for a slight red-tilt) favors ``small-field'' inflation models.Comment: Replaced to match accepted PRD version. 14 pages, 12 figs. Tiny changes due to smaller DASI & Maxima calibration errors. Expanded neutrino and tensor discussion, added refs, typos fixed. Combined CMB data, window and covariance matrix at http://www.hep.upenn.edu/~max/consistent.html or from [email protected]

Immersed boundary-finite element model of fluid-structure interaction in the aortic root

It has long been recognized that aortic root elasticity helps to ensure efficient aortic valve closure, but our understanding of the functional importance of the elasticity and geometry of the aortic root continues to evolve as increasingly detailed in vivo imaging data become available. Herein, we describe fluid-structure interaction models of the aortic root, including the aortic valve leaflets, the sinuses of Valsalva, the aortic annulus, and the sinotubular junction, that employ a version of Peskin's immersed boundary (IB) method with a finite element (FE) description of the structural elasticity. We develop both an idealized model of the root with three-fold symmetry of the aortic sinuses and valve leaflets, and a more realistic model that accounts for the differences in the sizes of the left, right, and noncoronary sinuses and corresponding valve cusps. As in earlier work, we use fiber-based models of the valve leaflets, but this study extends earlier IB models of the aortic root by employing incompressible hyperelastic models of the mechanics of the sinuses and ascending aorta using a constitutive law fit to experimental data from human aortic root tissue. In vivo pressure loading is accounted for by a backwards displacement method that determines the unloaded configurations of the root models. Our models yield realistic cardiac output at physiological pressures, with low transvalvular pressure differences during forward flow, minimal regurgitation during valve closure, and realistic pressure loads when the valve is closed during diastole. Further, results from high-resolution computations demonstrate that IB models of the aortic valve are able to produce essentially grid-converged dynamics at practical grid spacings for the high-Reynolds number flows of the aortic root

Inflation, cold dark matter, and the central density problem

A problem with high central densities in dark halos has arisen in the context of LCDM cosmologies with scale-invariant initial power spectra. Although n=1 is often justified by appealing to the inflation scenario, inflationary models with mild deviations from scale-invariance are not uncommon and models with significant running of the spectral index are plausible. Even mild deviations from scale-invariance can be important because halo collapse times and densities depend on the relative amount of small-scale power. We choose several popular models of inflation and work out the ramifications for galaxy central densities. For each model, we calculate its COBE-normalized power spectrum and deduce the implied halo densities using a semi-analytic method calibrated against N-body simulations. We compare our predictions to a sample of dark matter-dominated galaxies using a non-parametric measure of the density. While standard n=1, LCDM halos are overdense by a factor of 6, several of our example inflation+CDM models predict halo densities well within the range preferred by observations. We also show how the presence of massive (0.5 eV) neutrinos may help to alleviate the central density problem even with n=1. We conclude that galaxy central densities may not be as problematic for the CDM paradigm as is sometimes assumed: rather than telling us something about the nature of the dark matter, galaxy rotation curves may be telling us something about inflation and/or neutrinos. An important test of this idea will be an eventual consensus on the value of sigma_8, the rms overdensity on the scale 8 h^-1 Mpc. Our successful models have values of sigma_8 approximately 0.75, which is within the range of recent determinations. Finally, models with n>1 (or sigma_8 > 1) are highly disfavored.Comment: 13 pages, 6 figures. Minor changes made to reflect referee's Comments, error in Eq. (18) corrected, references updated and corrected, conclusions unchanged. Version accepted for publication in Phys. Rev. D, scheduled for 15 August 200

Weak Lensing and Dark Energy

We study the power of upcoming weak lensing surveys to probe dark energy. Dark energy modifies the distance-redshift relation as well as the matter power spectrum, both of which affect the weak lensing convergence power spectrum. Some dark-energy models predict additional clustering on very large scales, but this probably cannot be detected by weak lensing alone due to cosmic variance. With reasonable prior information on other cosmological parameters, we find that a survey covering 1000 sq. deg. down to a limiting magnitude of R=27 can impose constraints comparable to those expected from upcoming type Ia supernova and number-count surveys. This result, however, is contingent on the control of both observational and theoretical systematics. Concentrating on the latter, we find that the {\it nonlinear} power spectrum of matter perturbations and the redshift distribution of source galaxies both need to be determined accurately in order for weak lensing to achieve its full potential. Finally, we discuss the sensitivity of the three-point statistics to dark energy.Comment: 16 pages, revtex. Peacock-Dodds PS used for all w, which weakens the constraints. Tomography sec. expanded, estimate included of how well systematics need to be controlle

Three-Dimensional Mapping of the Dark Matter

We study the prospects for three-dimensional mapping of the dark matter to high redshift through the shearing of faint galaxies images at multiple distances by gravitational lensing. Such maps could provide invaluable information on the nature of the dark energy and dark matter. While in principle well-posed, mapping by direct inversion introduces exceedingly large, but usefully correlated noise into the reconstruction. By carefully propagating the noise covariance, we show that lensing contains substantial information, both direct and statistical, on the large-scale radial evolution of the density field. This information can be efficiently distilled into low-order signal-to-noise eigenmodes which may be used to compress the data by over an order of magnitude. Such compression will be useful for the statistical analysis of future large data sets. The reconstructed map also contains useful information on the localization of individual massive dark matter halos, and hence the dark energy from halo number counts, but its extraction depends strongly on prior assumptions. We outline a procedure for maximum entropy and point-source regularization of the maps that can identify alternate reconstructions.Comment: 11 pages, 5 figures, submitted to PR

Next-generation test of cosmic inflation

The increasing precision of cosmological datasets is opening up new opportunities to test predictions from cosmic inflation. Here we study the impact of high precision constraints on the primordial power spectrum and show how a new generation of observations can provide impressive new tests of the slow-roll inflation paradigm, as well as produce significant discriminating power among different slow-roll models. In particular, we consider next-generation measurements of the Cosmic Microwave Background (CMB) temperature anisotropies and (especially) polarization, as well as new Lyman-$\alpha$ measurements that could become practical in the near future. We emphasize relationships between the slope of the power spectrum and its first derivative that are nearly universal among existing slow-roll inflationary models, and show how these relationships can be tested on several scales with new observations. Among other things, our results give additional motivation for an all-out effort to measure CMB polarization.Comment: 10 pages, 8 figures, to appear in PRD; major changes are a reanalysis in terms of better cosmological parameters and clarifications on the contributions of polarization and Lyman-alpha dat