First Year Computer Science Projects at Coventry University:Activity-led integrative team projects with continuous assessment.

We describe the group projects undertaken by first year undergraduate Computer Science students at Coventry University. These are integrative course projects: designed to bring together the topics from the various modules students take, to apply them as a coherent whole. They follow an activity-led approach, with students given a loose brief and a lot of freedom in how to develop their project. We outline the new regulations at Coventry University which eases the use of such integrative projects. We then describe our continuous assessment approach: where students earn a weekly mark by demonstrating progress to a teacher as an open presentation to the class. It involves a degree of self and peer assessment and allows for an assessment of group work that is both fair, and seen to be fair. It builds attendance, self-study / continuous engagement habits, public speaking / presentation skills, and rewards group members for making meaningful individual contributions.Comment: 4 pages. Accepted for presentation at CEP2

Using Perturbative Least Action to Recover Cosmological Initial Conditions

We introduce a new method for generating initial conditions consistent with highly nonlinear observations of density and velocity fields. Using a variant of the Least Action method, called Perturbative Least Action (PLA), we show that it is possible to generate several different sets of initial conditions, each of which will satisfy a set of highly nonlinear observational constraints at the present day. We then discuss a code written to test and apply this method and present the results of several simulations.Comment: 24 pages, 6 postscript figures. Accepted for publication in Astrophysical Journa

Term Clustering of Syntactic Phrases

Term clustering and syntactic phrase formation are methods for transforming natural language text. Both have had only mixed success as strategies for improving the quality of text representations for document retrieval. Since the strengths of these methods are complementary, we have explored combining them to produce superior representations. In this paper we discuss our implementation of a syntactic phrase generator, as well as our preliminary experiments with producing phrase clusters. These experiments show small improvements in retrieval effectiveness resulting from the use of phrase clusters, but it is clear that corpora much larger than standard information retrieval test collections will be required to thoroughly evaluate the use of this technique

Cultural selection drives the evolution of human communication systems

Human communication systems evolve culturally, but the evolutionary mechanisms that drive this evolution are not well understood. Against a baseline that communication variants spread in a population following neutral evolutionary dynamics (also known as drift models), we tested the role of two cultural selection models: coordination- and content-biased. We constructed a parametrized mixed probabilistic model of the spread of communicative variants in four 8-person laboratory micro-societies engaged in a simple communication game. We found that selectionist models, working in combination, explain the majority of the empirical data. The best-fitting parameter setting includes an egocentric bias and a content bias, suggesting that participants retained their own previously used communicative variants unless they encountered a superior (content-biased) variant, in which case it was adopted. This novel pattern of results suggests that (i) a theory of the cultural evolution of human communication systems must integrate selectionist models and (ii) human communication systems are functionally adaptive complex systems

Contradiction and complacency shape attitudes towards the toll of roads on wildlife

© 2016 by the authors; licensee MDPI, Basel, Switzerland. Most people in the world now live in cities. Urbanisation simultaneously isolates people from nature and contributes to biodiversity decline. As cities expand, suburban development and the road infrastructure to support them widens their impact on wildlife. Even so, urban communities, especially those on the peri-urban fringe, endeavour to support biodiversity through wildlife friendly gardens, green spaces and corridors, and conservation estates. On one hand, many who live on city fringes do so because they enjoy proximity to nature, however, the ever increasing intrusion of roads leads to conflict with wildlife. Trauma (usually fatal) to wildlife and (usually emotional and financial) to people ensues. Exposure to this trauma, therefore, should inform attitudes towards wildlife vehicle collisions (WVC) and be linked to willingness to reduce risk of further WVC. While there is good anecdotal evidence for this response, competing priorities and better understanding of the likelihood of human injury or fatalities, as opposed to wildlife fatalities, may confound this trend. In this paper we sought to explore this relationship with a quantitative study of driver behaviour and attitudes to WVC from a cohort of residents and visitors who drive through a peri-urban reserve (Royal National Park) on the outskirts of Sydney, Australia. We distributed a self-reporting questionnaire and received responses from 105 local residents and 51 visitors to small townships accessed by roads through the national park. We sought the respondents’ exposure to WVC, their evasive actions in an impending WVC, their attitudes to wildlife fatalities, their strategies to reduce the risk of WVC, and their willingness to adopt new ameliorative measures. The results were partitioned by driver demographics and residency. Residents were generally well informed about mitigation strategies but exposure led to a decrease in viewing WVC as very serious. In addition, despite most respondents stating they routinely drive slower when collision risk is high (at dusk and dawn), our assessment of driving trends via traffic speeds suggested this sentiment was not generally adhered to. Thus we unveil some of the complexities in tackling driver’s willingness to act on reducing risk of WVC, particularly when risk of human trauma is low

Predictive learning, prediction errors, and attention: evidence from event-related potentials and eye tracking

Prediction error (‘‘surprise’’) affects the rate of learning: We learn more rapidly about cues for which we initially make incorrect predictions than cues for which our initial predictions are correct. The current studies employ electrophysiological measures to reveal early attentional differentiation of events that differ in their previous involvement in errors of predictive judgment. Error-related events attract more attention, as evidenced by features of event-related scalp potentials previously implicated in selective visual attention (selection negativity, augmented anterior N1). The earliest differences detected occurred around 120 msec after stimulus onset, and distributed source localization (LORETA) indicated that the inferior temporal regions were one source of the earliest differences. In addition, stimuli associated with the production of prediction errors show higher dwell times in an eyetracking procedure. Our data support the view that early attentional processes play a role in human associative learning

Predator scent induces differing responses in two sympatric macropodids

When prey species encounter the scent of a predator they must make a decision on how to respond. This may be either to ignore, flee, hide or alarm call. While many species are able to derive detailed information from the chemical cues associated with predator scent, for some the decision to respond is often made without being able to identify the actual location and intentions of the predator. Depending on the sociality and ecology of the species, it may pay to flee or to engage in predator inspection where knowledge is impure. We tested for this in two sympatric marsupial macropodids, the parma wallaby (Macropus parma) and the red-necked pademelon (Thylogale thetis), as little is known of how these species detect and respond to olfactory cues of predation risk. We observed that, when presented with a synthetic predator scent mimicking dog urine, the social forager, T. thetis, tended to spend more time close to the predator odour, while the solitary forager, M. parma, exhibited an aversive response. The results suggest that social and ecological constraints on the sensory modalities used in predator detection may influence how macropodids respond to olfactory predator cues. © CSIRO 2005

Cellular mRNAs access second ORFs using a novel amino acid sequence-dependent coupled translation termination-reinitiation mechanism

Polycistronic transcripts are considered rare in the human genome. Initiation of translation of internal ORFs of eukaryotic genes has been shown to use either leaky scanning or highly structured IRES regions to access initiation codons. Studies on mammalian viruses identified a mechanism of coupled translation termination-reinitiation that allows translation of an additional ORF. Here, the ribosome terminating translation of ORF-1 translocates upstream to reinitiate translation of ORF-2. We have devised an algorithm to identify mRNAs in the human transcriptome in which the major ORF-1 overlaps a second ORF capable of encoding a product of at least 50 aa in length. This identified 4368 transcripts representing 2214 genes. We investigated 24 transcripts, 22 of which were shown to express a protein from ORF-2 highlighting that 3' UTRs contain protein-coding potential more frequently than previously suspected. Five transcripts accessed ORF-2 using a process of coupled translation termination-reinitiation. Analysis of one transcript, encoding the CASQ2 protein, showed that the mechanism by which the coupling process of the cellular mRNAs was achieved was novel. This process was not directed by the mRNA sequence but required an aspartate-rich repeat region at the carboxyl terminus of the terminating ORF-1 protein. Introduction of wobble mutations for the aspartate codon had no effect, whereas replacing aspartate for glutamate repeats eliminated translational coupling. This is the first description of a coordinated expression of two proteins from cellular mRNAs using a coupled translation termination-reinitiation process and is the first example of such a process being determined at the amino acid level