Galactic accretion and the outer structure of galaxies in the CDM model

We have combined the semi-analytic galaxy formation model of Guo et al. (2011) with the particle-tagging technique of Cooper et al. (2010) to predict galaxy surface brightness profiles in a representative sample of ~1900 massive dark matter haloes (10^12--10^14 M_sol) from the Millennium II Lambda-CDM N-body simulation. Here we present our method and basic results focusing on the outer regions of galaxies, consisting of stars accreted in mergers. These simulations cover scales from the stellar haloes of Milky Way-like galaxies to the 'cD envelopes' of groups and clusters, and resolve low surface brightness substructure such as tidal streams. We find that the surface density of accreted stellar mass around the central galaxies of dark matter haloes is well described by a Sersic profile, the radial scale and amplitude of which vary systematically with halo mass (M_200). The total stellar mass surface density profile breaks at the radius where accreted stars start to dominate over stars formed in the galaxy itself. This break disappears with increasing M_200 because accreted stars contribute more of the total mass of galaxies, and is less distinct when the same galaxies are averaged in bins of stellar mass, because of scatter in the relation between M_star and M_200. To test our model we have derived average stellar mass surface density profiles for massive galaxies at z~0.08 by stacking SDSS images. Our model agrees well with these stacked profiles and with other data from the literature, and makes predictions that can be more rigorously tested by future surveys that extend the analysis of the outer structure of galaxies to fainter isophotes. We conclude that it is likely that the outer structure of the spheroidal components of galaxies is largely determined by collisionless merging during their hierarchical assemblyComment: Accepted by MNRAS. Shortened following referee's report, conclusions unchanged. 21 pages, 15 figure

Adding Environmental Gas Physics to the Semi-Analytic Method for Galaxy Formation: Gravitational Heating

We present results of an attempt to include more detailed gas physics motivated from hydrodynamical simulations within semi-analytic models (SAM) of galaxy formation, focusing on the role that environmental effects play. The main difference to previous SAMs is that we include 'gravitational' heating of the intra-cluster medium (ICM) by the net surplus of gravitational potential energy released from gas that has been stripped from infalling satellites. Gravitational heating appears to be an efficient heating source able to prevent cooling in environments corresponding to dark matter halos more massive than $\sim 10^{13}$M$_{\odot}$. The energy release by gravitational heating can match that by AGN-feedback in massive galaxies and can exceed it in the most massive ones. However, there is a fundamental difference in the way the two processes operate. Gravitational heating becomes important at late times, when the peak activity of AGNs is already over, and it is very mass dependent. This mass dependency and time behaviour gives the right trend to recover down-sizing in the star-formation rate of massive galaxies. Abridged...Comment: replaced by accepted version to ApJ, some sections have been dropped and text has been added to others to include the referee's comments, several typos have been correcte

Symposium in Celebration of the Fixed Target Program with the Tevatron

This document is an abridgement of the commemorative book prepared on the occasion of the symposium "In Celebration of the Fixed Target Program with the Tevatron" held at Fermilab on June 2, 2000. The full text with graphics contains, in addition to the material here, a section for each experiment including a "plain text" description, lists of all physics publications, lists of all degree recipients and a photo from the archives. The full text is available on the web at: http://conferences.fnal.gov/tevft/book

Ground state phase diagram of 2D electrons in a high Landau level: - DMRG study

The ground state phase diagram of 2D electrons in a high Landau level (index N=2) is studied by the density matrix renormalization group method. Pair correlation functions are systematically calculated for various filling factors from v=1/8 to 1/2. It is shown that the ground state phase diagram consists of three different CDW states called stripe-phase, bubble-phase, and Wigner crystal. The boundary between the stripe and the bubble phases is determined to be v_c = 0.38, and that for the bubble phase and Wigner crystal is v_c = 0.24. Each transition is of first order.Comment: 4 pages, 6 figure

Vanishing Hall Constant in the Stripe Phase of Cuprates

The Hall constant R_H is considered for the stripe structures. In order to explain the vanishing of R_H in LNSCO at x = 1/8, we use the relation of R_H to the Drude weight D as well as direct numerical calculation, to obtain results within the t-J model, where the stripes are imposed via a charge potential and a staggered magnetic field. The origin of R_H ~ 0 is related to a maximum in D and the minimal kinetic energy in stripes with a hole filling ~ 1/2. The same argument indicates on a possibility of R_H ~ 0 in the whole range of static stripes for x < 1/8.Comment: RevTeX, 4 pages, 5 figure

Removal of a frameshift between the hsdM and hsdS genes of the EcoKI Type IA DNA restriction and modification system produces a new type of system and links the different families of Type I systems

The EcoKI DNA methyltransferase is a trimeric protein comprised of two modification subunits (M) and one sequence specificity subunit (S). This enzyme forms the core of the EcoKI restriction/modification (RM) enzyme. The 3′ end of the gene encoding the M subunit overlaps by 1 nt the start of the gene for the S subunit. Translation from the two different open reading frames is translationally coupled. Mutagenesis to remove the frameshift and fuse the two subunits together produces a functional RM enzyme in vivo with the same properties as the natural EcoKI system. The fusion protein can be purified and forms an active restriction enzyme upon addition of restriction subunits and of additional M subunit. The Type I RM systems are grouped into families, IA to IE, defined by complementation, hybridization and sequence similarity. The fusion protein forms an evolutionary intermediate form lying between the Type IA family of RM enzymes and the Type IB family of RM enzymes which have the frameshift located at a different part of the gene sequence

A model for the evolution of prokaryotic DNA restriction-modification systems based upon the structural malleability of Type I restriction-modification enzymes

Restriction Modification (RM) systems prevent the invasion of foreign genetic material into bacterial cells by restriction and protect the host's genetic material by methylation. They are therefore important in maintaining the integrity of the host genome. RM systems are currently classified into four types (I to IV) on the basis of differences in composition, target recognition, cofactors and the manner in which they cleave DNA. Comparing the structures of the different types, similarities can be observed suggesting an evolutionary link between these different types. This work describes the ‘deconstruction’ of a large Type I RM enzyme into forms structurally similar to smaller Type II RM enzymes in an effort to elucidate the pathway taken by Nature to form these different RM enzymes. Based upon the ability to engineer new enzymes from the Type I ‘scaffold’, an evolutionary pathway and the evolutionary pressures required to move along the pathway from Type I RM systems to Type II RM systems are proposed. Experiments to test the evolutionary model are discussed

A Comparison of Two Ovine Lumbar Intervertebral Disc Injury Models for the Evaluation and Development of Novel Regenerative Therapies

© The Author(s) 2018. Study Design: Large animal research. Objective: Lumbar discectomy is the most commonly performed spinal surgical procedure. We investigated 2 large animal models of lumbar discectomy in order to study the regenerative capacity of mesenchymal stem cells following disc injury. Methods: Twelve adult ewes underwent baseline 3-T magnetic resonance imaging (MRI) followed by lumbar intervertebral disc injury by either drill bit (n = 6) or annulotomy and partial nucleotomy (APN) (n = 6). Necropsies were performed 6 months later. Lumbar spines underwent 3-T and 9.4-T MRI prior to histological, morphological and biochemical analysis. Results: Drill bit-injured (DBI) and APN-injured discs demonstrated increased Pfirrmann grades relative to uninjured controls (P <.005), with no difference between the 2 models. Disc height index loss was greater in the APN group compared with the DBI group (P <.005). Gross morphology injury scores were higher in APN than DBI discs (P <.05) and both were higher than controls (P <.005). Proteoglycan was reduced in the discs of both injury models relative to controls (P <.005), but lower in the APN group (P <.05). Total collagen of the APN group disc regions was higher than DBI and control discs (P <.05). Histology revealed more matrix degeneration, vascular infiltration, and granulation in the APN model. Conclusion: Although both models produced disc degeneration, the APN model better replicated the pathobiology of human discs postdiscectomy. We therefore concluded that the APN model was a more appropriate model for the investigation of the regenerative capacity of mesenchymal stem cells administered postdiscectomy

Atomic force microscopy of the EcoKI Type I DNA restriction enzyme bound to DNA shows enzyme dimerization and DNA looping

Atomic force microscopy (AFM) allows the study of single protein–DNA interactions such as those observed with the Type I Restriction–Modification systems. The mechanisms employed by these systems are complicated and understanding them has proved problematic. It has been known for years that these enzymes translocate DNA during the restriction reaction, but more recent AFM work suggested that the archetypal EcoKI protein went through an additional dimerization stage before the onset of translocation. The results presented here extend earlier findings confirming the dimerization. Dimerization is particularly common if the DNA molecule contains two EcoKI recognition sites. DNA loops with dimers at their apex form if the DNA is sufficiently long, and also form in the presence of ATPγS, a non-hydrolysable analogue of the ATP required for translocation, indicating that the looping is on the reaction pathway of the enzyme. Visualization of specific DNA loops in the protein–DNA constructs was achieved by improved sample preparation and analysis techniques. The reported dimerization and looping mechanism is unlikely to be exclusive to EcoKI, and offers greater insight into the detailed functioning of this and other higher order assemblies of proteins operating by bringing distant sites on DNA into close proximity via DNA looping