Extensive local adaptation within the chemosensory system following Drosophila melanogaster's global expansion.

How organisms adapt to new environments is of fundamental biological interest, but poorly understood at the genetic level. Chemosensory systems provide attractive models to address this problem, because they lie between external environmental signals and internal physiological responses. To investigate how selection has shaped the well-characterized chemosensory system of Drosophila melanogaster, we have analysed genome-wide data from five diverse populations. By couching population genomic analyses of chemosensory protein families within parallel analyses of other large families, we demonstrate that chemosensory proteins are not outliers for adaptive divergence between species. However, chemosensory families often display the strongest genome-wide signals of recent selection within D. melanogaster. We show that recent adaptation has operated almost exclusively on standing variation, and that patterns of adaptive mutations predict diverse effects on protein function. Finally, we provide evidence that chemosensory proteins have experienced relaxed constraint, and argue that this has been important for their rapid adaptation over short timescales

Running biomechanics: shorter heels, better economy

Better running economy (i.e. a lower rate of energy consumption at a given speed) is correlated with superior distance running performance. There is substantial variation in running economy, even among elite runners. This variation might be due to variation in the storage and reutilization of elastic energy in tendons. Using a simple musculoskeletal model, it was predicted that the amount of energy stored in a tendon during a given movement depends more critically on moment arm than on mechanical properties of the tendon, with the amount of stored energy increasing as the moment arm gets smaller. Assuming a link between elastic energy reutilization and overall metabolic cost of running, a smaller moment arm should therefore be associated with superior running economy. This prediction was confirmed experimentally in a group of 15 highly trained runners. The moment arm of the Achilles tendon was determined from standardized photographs of the ankle, using the position of anatomical landmarks. Running economy was measured as the rate of metabolic energy consumption during level treadmill running at a speed of 16 km

Long-Ranged Correlations in Sheared Fluids

The presence of long-ranged correlations in a fluid undergoing uniform shear flow is investigated. An exact relation between the density autocorrelation function and the density-mometum correlation function implies that the former must decay more rapidly than $1/r$, in contrast to predictions of simple mode coupling theory. Analytic and numerical evaluation of a non-perturbative mode-coupling model confirms a crossover from $1/r$ behavior at ''small'' $r$ to a stronger asymptotic power-law decay. The characteristic length scale is $\ell \approx \sqrt{\lambda_{0}/a}$ where $$ is the sound damping constant and $a$ is the shear rate.Comment: 15 pages, 2 figures. Submitted to PR

Self-consistent description of nuclear compressional modes

Isoscalar monopole and dipole compressional modes are computed for a variety of closed-shell nuclei in a relativistic random-phase approximation to three different parametrizations of the Walecka model with scalar self-interactions. Particular emphasis is placed on the role of self-consistency which by itself, and with little else, guarantees the decoupling of the spurious isoscalar-dipole strength from the physical response and the conservation of the vector current. A powerful new relation is introduced to quantify the violation of the vector current in terms of various ground-state form-factors. For the isoscalar-dipole mode two distinct regions are clearly identified: (i) a high-energy component that is sensitive to the size of the nucleus and scales with the compressibility of the model and (ii) a low-energy component that is insensitivity to the nuclear compressibility. A fairly good description of both compressional modes is obtained by using a ``soft'' parametrization having a compression modulus of K=224 MeV.Comment: 28 pages and 10 figures; submitted to PR

Single Spin Measurement using Single Electron Transistors to Probe Two Electron Systems

We present a method for measuring single spins embedded in a solid by probing two electron systems with a single electron transistor (SET). Restrictions imposed by the Pauli Principle on allowed two electron states mean that the spin state of such systems has a profound impact on the orbital states (positions) of the electrons, a parameter which SET's are extremely well suited to measure. We focus on a particular system capable of being fabricated with current technology: a Te double donor in Si adjacent to a Si/SiO2 interface and lying directly beneath the SET island electrode, and we outline a measurement strategy capable of resolving single electron and nuclear spins in this system. We discuss the limitations of the measurement imposed by spin scattering arising from fluctuations emanating from the SET and from lattice phonons. We conclude that measurement of single spins, a necessary requirement for several proposed quantum computer architectures, is feasible in Si using this strategy.Comment: 22 Pages, 8 Figures; revised version contains updated references and small textual changes. Submitted to Phys. Rev.

Split-off dimer defects on the Si(001)2x1 surface

Dimer vacancy (DV) defect complexes in the Si(001)2x1 surface were investigated using high-resolution scanning tunneling microscopy and first principles calculations. We find that under low bias filled-state tunneling conditions, isolated 'split-off' dimers in these defect complexes are imaged as pairs of protrusions while the surrounding Si surface dimers appear as the usual 'bean-shaped' protrusions. We attribute this to the formation of pi-bonds between the two atoms of the split-off dimer and second layer atoms, and present charge density plots to support this assignment. We observe a local brightness enhancement due to strain for different DV complexes and provide the first experimental confirmation of an earlier prediction that the 1+2-DV induces less surface strain than other DV complexes. Finally, we present a previously unreported triangular shaped split-off dimer defect complex that exists at SB-type step edges, and propose a structure for this defect involving a bound Si monomer.Comment: 8 pages, 7 figures, submitted to Phys. Rev.

Null Deformed Domain Wall

We study null 1/4 BPS deformations of flat domain wall solutions (NDDW) in N=2, d=5 gauged supergravity with hypermultiplets and vector multiplets coupled. These are uncharged time-dependent configurations and contain as special case, 1/2 supersymmetric flat domain walls (DW), as well as 1/2 BPS null solutions of the ungauged supergravity. Combining our analysis with the classification method initiated by Gauntlett et al., we prove that all the possible deformations of the DW have origin in the hypermultiplet sector or/and are null. Here, we classify all the null deformations: we show that they naturally organize themselves into "gauging" (v-deformation) and "non gauging" (u-deformation). They have different properties: only in presence of v-deformation is the solution supported by a time-dependent scalar potential. Furthermore we show that the number of possible deformations equals the number of matter multiplets coupled. We discuss the general procedure for constructing explicit solutions, stressing the crucial role taken by the integrability conditions of the scalars as spacetime functions. Two analytical solutions are presented. Finally, we comment on the holographic applications of the NDDW, in relation to the recently proposed time-dependent AdS/CFT.Comment: 38 pages; minor changes, references added; text revised, minor changes, final version published in JHE

Theory of Two-Dimensional Josephson Arrays in a Resonant Cavity

We consider the dynamics of a two-dimensional array of underdamped Josephson junctions placed in a single-mode resonant cavity. Starting from a well-defined model Hamiltonian, which includes the effects of driving current and dissipative coupling to a heat bath, we write down the Heisenberg equations of motion for the variables of the Josephson junction and the cavity mode, extending our previous one-dimensional model. In the limit of large numbers of photons, these equations can be expressed as coupled differential equations and can be solved numerically. The numerical results show many features similar to experiment. These include (i) self-induced resonant steps (SIRS's) at voltages V = (n hbar Omega)/(2e), where Omega is the cavity frequency, and n is generally an integer; (ii) a threshold number N_c of active rows of junctions above which the array is coherent; and (iii) a time-averaged cavity energy which is quadratic in the number of active junctions, when the array is above threshold. Some differences between the observed and calculated threshold behavior are also observed in the simulations and discussed. In two dimensions, we find a conspicuous polarization effect: if the cavity mode is polarized perpendicular to the direction of current injection in a square array, it does not couple to the array and there is no power radiated into the cavity. We speculate that the perpendicular polarization would couple to the array, in the presence of magnetic-field-induced frustration. Finally, when the array is biased on a SIRS, then, for given junction parameters, the power radiated into the array is found to vary as the square of the number of active junctions, consistent with expectations for a coherent radiation.Comment: 11 pages, 8 eps figures, submitted to Phys. Rev

Achieving food security in the face of climate change: Final report from the Commission on Sustainable Agriculture and Climate Change

To bring our interconnected food and climate systems within a ‘safe operating space’ for people and the planet, the Commission on Sustainable Agriculture and Climate Change has outlined seven major areas for policy action. Throughout 2011, the Commission worked to harvest the practical solutions detailed in the many recent authoritative reports on food security and climate change. By combining this thorough review of the substantive evidence base with the diverse perspectives and disciplinary expertise, the 13 Commissioners have crafted a succinct roadmap for policy makers. The Commission offers no ‘one-size-fits-all’ solution, but rather points the way forward to foster national, regional and sectoral innovation that can aggregate up to meaningful global change