35 research outputs found

    IRF2_cline

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    ClineFit 2.0a input file for IRF2 sequence

    Newick format tree of Gruidae

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    Branch lengths are in millions of years. Krajewski et al. (2010) calculated divergence dates in parallel analyses using a standard deviation of 0.5, 1.0, and 1.5 on the lognormal priors of the age calibration points based on crane fossil records. We used branch lengths derived from 0.5 standard deviation because it produced a highly resolved topology, however still with a polytomy comprising nodes 12.5 and 11. We used the median value of the 95% highest posterior density interval as our branch length for node 12.5 to resolve the tree

    Myo_aligned

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    FASTA file of aligned Myo2 sequence

    mass_cline

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    ClineFit 2.0a input file for mass measurement

    crest_length_cline

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    ClineFit 2.0a input file for crest length measurement

    MUSK_aligned

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    FASTA file of aligned MUSK sequence

    mtDNAcline

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    ClineFit 2.0a input file for Cyt b sequence

    MYO_cline

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    ClineFit 2.0a input file for Myo2 sequence

    tail_cline

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    ClineFit 2.0a input file for white tail tip measurement

    Structure input file

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    Structure input file for 4 loci. The order of the loci in the file are: MUSK, IRF2, Myo2, Cyt b
    corecore